Gene Paes_0273 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_0273 
SymboldapF 
ID6460750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp285752 
End bp286546 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content52% 
IMG OID642724265 
Productdiaminopimelate epimerase 
Protein accessionYP_002014977 
Protein GI194333117 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0253] Diaminopimelate epimerase 
TIGRFAM ID[TIGR00652] diaminopimelate epimerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000651876 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000261892 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAACACAT CGATCAAGTT TTCTAAAATG TCGGGTGCCG GGAACGATTT CATCGTTTTC 
GATAACATGC ACAAGGACAT TCATCTGTCT GCCGACAACA TCCGCTCTCT CTGCACGAGG
CGCACAGGTA TCGGCGCTGA CGGTCTTATT CTCATCGAAC CGTCAGCTCG GTTCGACTTT
GCCATGAAGT ACTATAATGC CGACGGGCTG CCAGGATCGA TGTGCGGAAA CGGCGGTCGG
TGTGCTGTGT ATTTCGCATG GACCATCGGC GCCTGCGGGA CAACAACGGC ATTTGAAGCT
AACGGAAACC GTTATGATGC GTGGGTTTGT GACAATGAAG CGATCAGGCT CAAAATGATT
CTCCCCCACG ACTTCCGCGA CGAGTTTGGC TCGAACGGCT TGAGCTGCAA CTTTGTCAAT
ACGGGATCAC CGCATACCAT TATCTTCACC GATGAGCTCG ACACCTTTGA CGTTGAATCA
ACAGGGCGTC TGATACGTAA CGACAGCAAG CTCTTTCCTG AAGGAACAAA CGTCAATTTT
CTGCAGGTCA CCTCTCCTGA AAGCCTCAAG GTAAGAACGT ATGAGCGGGG GGTCGAAGCA
GAAACGCTTG CATGCGGCAC CGGGGCCGTA GCCGCTGCGT TAATGAGTTA CAAGCTCGGA
AAGATTGCCT CGAGAAGCGT TTCGGTCAGC GTCAGAAGCG GAGATATTCT GACCATCGAT
TTTTCAGAAG ACATGCAGGA TGTCTATCTC TCCGGACCGG CGACCATTGT GTATACCGGG
TCAATACAGA TGTGA
 
Protein sequence
MNTSIKFSKM SGAGNDFIVF DNMHKDIHLS ADNIRSLCTR RTGIGADGLI LIEPSARFDF 
AMKYYNADGL PGSMCGNGGR CAVYFAWTIG ACGTTTAFEA NGNRYDAWVC DNEAIRLKMI
LPHDFRDEFG SNGLSCNFVN TGSPHTIIFT DELDTFDVES TGRLIRNDSK LFPEGTNVNF
LQVTSPESLK VRTYERGVEA ETLACGTGAV AAALMSYKLG KIASRSVSVS VRSGDILTID
FSEDMQDVYL SGPATIVYTG SIQM