Gene Paes_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_0003 
Symbol 
ID6459271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp2893 
End bp4005 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content42% 
IMG OID642723995 
ProductDNA replication and repair protein RecF 
Protein accessionYP_002014716 
Protein GI194332856 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.152297 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGACTTG ATGAGATAAA GATTCAGAAC TTCAGAAAGC ATAGTGAGCT TATCTTTTCC 
CCTTCAGAGG GGATTAATCT GATTTTTGGA CCAAATGGTT CGGGTAAAAC CAATATTTTG
GAGGCTATCC ATTATTGTGC TCTGACTAAA GGGTTCAATC GAACGACTGA TCGACAATGC
ATGAACTTTT CAGCAGAGTC TTTTCTGCTG AAAAGTTTGT TTACCAGTGA TACTGGCTGT
CAATACAGGG TTCACGTTGA TTTTTCTACC AATGGAGGAA AAAGTATTTC CCTTAATAAC
AGCCAATTAG AAAAATTTTC AGCCCTGATA GGCCTCATTC CCTGTATACT TTTTTCGCCT
GCCGAGATCA CGATCGTTCA TGGTTCACCA CAGGAACGAA GACGATTTCT TGACAATGCT
CTTTGTCAGA TCAGTAAAAG TTATCTGGAA CAACTGCTGC AATACAGGAG AATTCTTCAG
CAGAGAAATG CACTGCTTCA TTCCTCTTGG GATCGTTCTT CTCCGGCTCC GGATATGAAT
ATCTGGACTG AGCTTCTTGC TGAATCGGGA GCTTTCATCA TCAAGGAGAG GATGGATTTT
CTCGATGAGT TTCAACCCTA TTTCAGCAAT GCCTATGCCA TTCTCGATAC GGGAGAGATC
CCCAGGTTAA CGTATCGTTC TTCTCTTGGT AAAGCACTTG TATCATCTGA TCGAGCAGGT
ATTGCCGATA GTCTTATGCA TCGATTCGGA GAAATTCAGC ATCAGGAGCA AGTAAGAAAA
CAAACTTTAC TTGGTCCTCA CCGTGATGAG ATTTTGTTTT ATCTGGATGG TTCAGATGTT
AAAAAATATG CATCACAAGG ACAGACGAGG ACGTTTTTGA TTGCTTTAAA GGTTGCTCTG
CAGCGGTTTC TTTTCGATAA AAAGGGGGAG CAGTCGATTT TTCTTCTCGA TGATATTTTT
AGTGAGCTTG ATCAAAGACG CGTAGAGCGA GTCCTTGAGA TGATTGCCGG ATTTGGTCAG
TCTCTTATTA CGTCCACTGA AAAAACCGGG TTGTCTTTTC TTCATGAGAT TTCAATTCAC
GATATGCTGT ACAAGCATGG AGATCCTTTG TGA
 
Protein sequence
MRLDEIKIQN FRKHSELIFS PSEGINLIFG PNGSGKTNIL EAIHYCALTK GFNRTTDRQC 
MNFSAESFLL KSLFTSDTGC QYRVHVDFST NGGKSISLNN SQLEKFSALI GLIPCILFSP
AEITIVHGSP QERRRFLDNA LCQISKSYLE QLLQYRRILQ QRNALLHSSW DRSSPAPDMN
IWTELLAESG AFIIKERMDF LDEFQPYFSN AYAILDTGEI PRLTYRSSLG KALVSSDRAG
IADSLMHRFG EIQHQEQVRK QTLLGPHRDE ILFYLDGSDV KKYASQGQTR TFLIALKVAL
QRFLFDKKGE QSIFLLDDIF SELDQRRVER VLEMIAGFGQ SLITSTEKTG LSFLHEISIH
DMLYKHGDPL