Gene Rpal_5320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5320 
Symbol 
ID6413021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp5740478 
End bp5741119 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content69% 
IMG OID642715209 
Productpolysaccharide export protein 
Protein accessionYP_001994281 
Protein GI192293676 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.884665 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGTGTCG TAGGCGCGTT TCAAGTATCG ATGATCATCG TGGCGACCGC GCTCGCGCTC 
GGCGGCTGCA TGCGCCGGCC TGGGCCGGTC GTGATGGTGC AGCCACAAAA CACCCTCGAC 
ACCATCGCTT ATGGCGGCGG CGTTCCGCCG ATGGCGGCGG CCTATGCGGC GCCGGGTGGG 
GAGCCAGCAT ACCGGCTCGA CGCCGGCGAC CGGCTGCGCG TCGTGGTGTA CGGCCAGGAA 
GGGCTGACCA ACACCTATTC GATCGATGCT GCCGGTTCGA TCACTATGCC GCTGATCGGC 
GCGGTGCCGG CGCGCGGCCG CACCCCGGCC GGCCTTGCCG CCGAGATCAC CGCGCGGCTG 
CGCCGCGGCT TTATCCGCGA GCCCTCGGTT GCGGTGGAAG TCGAGTCATA TCGGCCGTTC 
TTCATCCTCG GCGAGGTCAC TGCGCCCGGC CAATATCCAT ACGTGCCACA CATGAGCGTT 
GAGAGCGCCG TGGCGATCGC CGGCGGTTTC ACGCCGCGGG CGCAGCGCGA TCGGGTGACC 
GTGACGCATC CGGAAGGTGG CGGCATGATC CGCGAGGTGG TGCCGCTCGG CACGCCGCTC 
AGCCCCGGCG ACACCGTCTA TGTCGGCGAA CGCTGGTTCT GA
 
Protein sequence
MRVVGAFQVS MIIVATALAL GGCMRRPGPV VMVQPQNTLD TIAYGGGVPP MAAAYAAPGG 
EPAYRLDAGD RLRVVVYGQE GLTNTYSIDA AGSITMPLIG AVPARGRTPA GLAAEITARL 
RRGFIREPSV AVEVESYRPF FILGEVTAPG QYPYVPHMSV ESAVAIAGGF TPRAQRDRVT 
VTHPEGGGMI REVVPLGTPL SPGDTVYVGE RWF