Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5297 |
Symbol | |
ID | 6412998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 5715128 |
End bp | 5717593 |
Gene Length | 2466 bp |
Protein Length | 821 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642715186 |
Product | protein of unknown function DUF214 |
Protein accession | YP_001994258 |
Protein GI | 192293653 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGGCGCG CGCTGTGGAT CCTCGCCGTG CTGCTGAGCC ACTGGCGACG GCATCCGATG CAGCTTGCGA CCCTGGCGAT CGGCCTGATC TCCGCGACCG CCTTGTGGAG CGGCGTGCAG GCGTTGAACG CGCAGGCCCG CACGAGTTAC GACCGCGCCG CCGCGGCGCT CGGCGGCAAT CGCACCGCAA CGTTGGTGGC GCGTGACGGC GGCAACTTCT CCCAGCAGCT CTATGTCGAC CTGCGCCGCG CCGGCTGGCA GGTGTCTCCG GCGGTCGAAG GCGCGATCCG GATTAGCGGC CGGTCGCTGC GGCTACTCGG CGTCGAGCCA CTATCGCTGC CGGTCGAAGC CCGCACCGCG CCAGCGCTCG GCACGGGCGA TCTGCAGGGC TTCATTCTGC CGCCGGGCCA GACGCTGATC GCGCCGGAGA CGCTGCGCGA CTTCAGCCTC GCCGAAGGCG CGACGCCGGA GCTGCCGAAC GGCCAGCATC TGCCGCCGCT GAAGCCACAA GCGGAGATCG CGCCCGGCGT GCTGGTGGTC GACATCGGCA TCGCGCAGAA ACTGCTCGAC ATGCCGCACC GGCTGTCGCG GCTGCTGCTC GGCAGCAAGC CAAGCGGTTC GCGCCCGCCG CTCCGCGACA TCGTCGACGA CAAGCTGCAG CTCGATCAGC CGGATGCCGC TACTGAGCTT GAGCGCCTCA CCGACAGCTT CCACCTCAAC CTGACAGCGT TCGGTCTGCT ATCGTTCCTG GTCGGATTGT TCATCGTCAA TTCGGCGATC GGGCTCGCGT TCGAGCAGCG CCGCCCGATG CTGCGCACCT TGCGTGCCTG CGGCGCCTCG GCGCGCCAGC TCAACGCCGT GATGGTAATC GAGCTGTGCC TGATCGCGCT GCTCGCCGGC CTGATCGGTC TCGTCTGCGG CTATCTGATC GCCGCGACGC TGCTGCCCGA CGTCGCCGCC ACCTTGCGGG GCCTGTACGG CGCGCAGATT CCCGGTGAGC TGTCGCTGCG GCCGCAATGG TGGCTCGCCG GCATCGCCAT CAGCATTCTC GGCACGCTCG CCGCCGCGTC CACGGCGCTG ATCAAGGCGG CAAGGCTGCC GGTGCTGGTC GCCGCGCAGC CTTATGCGTG GCAGCAGGCG CAGTATCGCT GGCTGCTCGT GCAGGGCGTG GCTGCGCTCG CGGTGTTCGC CGCTGGTTTC GGCTTTCTGT GGTTCGGCGA TTCGCTGCTA TCGGGCTTTG CGGTGTTGGC CGCGATCCTG CTCGGCGCCG CGCTCGGGCT GCCGGCGATC CTCGGGCTGG TGCTGGCGCT CGGCGAGAAG CTGGCGCGGG GACCGCTGAC GAGCTGGATC TGGGCCGACA GCCGGCTGCA GCTCTCCGGC CTCTCCCTGG CACTGATGGC GCTGCTGCTG GCGCTCGGCG TCAATGTCGG CGTCGGCACC ATGGTGGAGA GCTTCAGCCG CACCTTCCAG CGCTGGCTCG ACGGCCGGCT CGCCGCGGAG GTCTATCTCA ATGCCGCCAG CGACCAACAG GCGACCGAGA TCAAGGCTTG GCTGAAAGGC CGTCCCGAAG TTACCTCGCT GCTTCCGGGC GCGCGCGCCG AAGTGAAGCT GCAGGGCCAG CCGGTTGAGC TGATCGGATT CGCCGACGAT GCCACGTATC GCGATCACTG GCCGCTGCTC GAGCACACCA AAGATGTCTG GGACCGCGTC GCGCGCGGCG ATGCGGCACT GGTCAGCGAA CAGCTGTGGC GCCGGCTCGG CGTCAAGCTC GGTGACCGCA TCGTGGTGCC GAGCGACCGC GGCCCGTGGC CGGTCGAGGT GGTGGGGATC TATGCCGACT ATGGCAATCC GCGCGGCCAG CTCGGCATCG CGTTCGGCGC GCTGGTGACG CATTTCCCCG ATGTGGCCAA GACGAGGTTC GGGCTGCGGG TAGATCCCGC ACGGGTGCCG GCCCTGATCG CCGACCTGCG CAACAGCTTC GCGCTCGGGG AGCGGAGCCT CGCCGATCAG TCGACGTTGA AAGCGATCTC CAAACAAATC TTCAGCCGCA CCTTCGCGGT GACCACCGCG CTCAACGCTT TCACGCTCGG CATCGCCGGC GTGGCGCTGC TGACCAGCCT TCTGACCCTC GGTGCATCTC GGCTGCCGCA GCTCGCGCCG CTGTGGGCGA TCGGCATCAC CCGCCGCCGG TTGGCTTTGA TCGAACTGAT GAAGACGCTG GCGATGGCGG CGATCACCGC GCTGCTGGCA CTGCCGCTCG GCCTGCTGGT CGCGTGGTGC CTGATCGCAG TGGTGAACGT CAAAGCATTT GGCTGGCGTC TGCCGTTCGA GGTGTTTCCG TTCGAACTGG CAAAGCTGGT CGGCATCGCG CTGCTGGCGA CGCTGCTTGC AGCGGCGCTG CCGATCCTGA AGCTGATGCG GATGCAGCCG GCGCGGCTGG TGAAGGTGTT TGCCGATGAA CGCTAG
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Protein sequence | MRRALWILAV LLSHWRRHPM QLATLAIGLI SATALWSGVQ ALNAQARTSY DRAAAALGGN RTATLVARDG GNFSQQLYVD LRRAGWQVSP AVEGAIRISG RSLRLLGVEP LSLPVEARTA PALGTGDLQG FILPPGQTLI APETLRDFSL AEGATPELPN GQHLPPLKPQ AEIAPGVLVV DIGIAQKLLD MPHRLSRLLL GSKPSGSRPP LRDIVDDKLQ LDQPDAATEL ERLTDSFHLN LTAFGLLSFL VGLFIVNSAI GLAFEQRRPM LRTLRACGAS ARQLNAVMVI ELCLIALLAG LIGLVCGYLI AATLLPDVAA TLRGLYGAQI PGELSLRPQW WLAGIAISIL GTLAAASTAL IKAARLPVLV AAQPYAWQQA QYRWLLVQGV AALAVFAAGF GFLWFGDSLL SGFAVLAAIL LGAALGLPAI LGLVLALGEK LARGPLTSWI WADSRLQLSG LSLALMALLL ALGVNVGVGT MVESFSRTFQ RWLDGRLAAE VYLNAASDQQ ATEIKAWLKG RPEVTSLLPG ARAEVKLQGQ PVELIGFADD ATYRDHWPLL EHTKDVWDRV ARGDAALVSE QLWRRLGVKL GDRIVVPSDR GPWPVEVVGI YADYGNPRGQ LGIAFGALVT HFPDVAKTRF GLRVDPARVP ALIADLRNSF ALGERSLADQ STLKAISKQI FSRTFAVTTA LNAFTLGIAG VALLTSLLTL GASRLPQLAP LWAIGITRRR LALIELMKTL AMAAITALLA LPLGLLVAWC LIAVVNVKAF GWRLPFEVFP FELAKLVGIA LLATLLAAAL PILKLMRMQP ARLVKVFADE R
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