Gene Rpal_5261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5261 
Symbol 
ID6412962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5674963 
End bp5675676 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content67% 
IMG OID642715151 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_001994223 
Protein GI192293618 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR02154] phosphate regulon transcriptional regulatory protein PhoB 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.909356 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGCGC GCATTCTGGT AGTTGAAGAC GAGGAAGCGC TGACGACGCT GCTGCGATAC 
AATCTGGAAT CCGAGGGCTA CGAGGTCGAG ACGGTGGCCC GCGGCGACGA TGCCGACACC
CGGATGAAAG AGCGCATTCC CGATCTGGTG GTGTTGGACT GGATGTTGCC GGGCCTGTCC
GGCATCGAGC TGTGCCGCCG GCTGCGGGCG CGGCCGGAAA CCAAGCAACT GCCGATCATC
ATGCTGACGG CGCGCGGCGA AGAGAGCGAA CGCGTTCGCG GCCTCGCGAC CGGGGCCGAC
GATTACATCG TCAAGCCGTT CTCGGTGCCG GAGCTGCTGG CGCGGGTGAA GGGCCTGCTC
CGCCGCGCGG CGCCGGAGCG GCTCGCCACC GTGCTGGCCT ATGGCGATCT CGAACTCGAT
CGCGACAAGC GCCGGGTGGC GCGCTCCGGC CGGCCGATCG ATCTCGGCCC GACCGAGTAT
CGCTTGCTCG AGTTTTTCCT GGAGCATCCG GGCCGGGTGT TCAGCCGCGA ACAGTTGCTC
GACGGCGTCT GGGGCCGCGA CATCTATATC GATGAGCGGA CCGTCGACGT GCACATCGGG
CGTCTGCGCA AGCTGCTCAA TATCGGCCGC GAGCAGGATC CGATCCGCAC CGTCCGCGGT
GCCGGCTACG CCCTCGACGA CCGCTTTGCC AAGGTTGAAG GCAGCCCGTC GTAG
 
Protein sequence
MAARILVVED EEALTTLLRY NLESEGYEVE TVARGDDADT RMKERIPDLV VLDWMLPGLS 
GIELCRRLRA RPETKQLPII MLTARGEESE RVRGLATGAD DYIVKPFSVP ELLARVKGLL
RRAAPERLAT VLAYGDLELD RDKRRVARSG RPIDLGPTEY RLLEFFLEHP GRVFSREQLL
DGVWGRDIYI DERTVDVHIG RLRKLLNIGR EQDPIRTVRG AGYALDDRFA KVEGSPS