| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5223 |
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| Symbol | |
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| ID | 6412923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5635587 |
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| End bp | 5636852 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642715113 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001994186 |
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| Protein GI | 192293581 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCATT TCGACTATCG CGACGGCGTG CTGCACGCCG AAGGCGTCAG CCTTGCCTCG
ATCGCGCAGG ACGTCGGTAC GCCGTTCTAC TGCTACTCGA GCGCGACGCT GGAGCGGCAC
TACCGGGTGT TCACCGAGGC CTTCGCCGGC CTCGATGCGC TGGTGTGCTA CGCCATGAAG
GCCAATTCCA ACCAGTCGGT GCTGCGCACC CTGGCCAAGC TCGGTGCCGG CGCCGACGTG
GTGTCGGGCG GCGAACTGCA GCGCGCGCTC GCGGCGGGAA TTCCACCGAG CAAGATCGTG
TTCTCCGGCG TCGGCAAGAC CGAGGCCGAG CTGCGCGCCG CGCTCGCCCA CGACATCAAG
TGCCTCAACG TCGAATCCGA GCCCGAGCTC GAACAGCTGT CGCGTATCGC GGTCGAGACC
GGCCGCACGG CGCGGATTTC GCTGCGGGTC AATCCAGACG TCGATTCCGG CACCCACGCC
AAGATCTCCA CCGGCAAGTC GGAGAACAAG TTCGGCATCC CGATTCGCCA CGCCCGCGAG
GTCTATGCCC GCGCCGCCAA GCTGCCGGGC ATCCAGGTCA CCGGCGTCGA CGTCCATATC
GGCAGCCAGA TCGTCGACCT GGCGCCGATG GAAGCCGCGT TCCGCAAGGT TGCCGAATTC
ATCCACGTAC TGCGCGGCGA CGGTCACACG GTCAGCCATG TCGATTTCGG CGGCGGCCTC
GGCATCCCGT ACTACGAGGA TCGCGACGCG CCGCCGGAGC CGTTCGCCTA TGCGGAGATG
GTCAAGCGCG TCACCCACAA TCTCGGCTGC ACGCTGCTGT TCGAGCCGGG CCGGATGATC
GTCGGCAACG CCGGCATCCT GGTCGCCAAG GTGATCTATG TGAAGCACGG CGACGGCAAG
ACCTTCGTGA TCATCGACGC GGCGATGAAC GATCTGATCC GCCCGACGCT GTACGAGGCG
TATCACGAGA TCATCGCCGT GCAGCAGCCG GCACCCGGCG TAGCTACCAT GGTGGCCGAC
GTCGTCGGCC CGGTGTGCGA GACCGGCGAT TACCTCGCGC TCGATCGCAA GCTGCCTGAA
CTGAAGGCCG GCGATCTGAT CGCGATCATG ACGGCGGGCG CTTACGGCGC GGTGCAGGCG
TGTACTTACA ACACCCGCGC GCTGGTGCCG GAAGTGCTGG TGAAGGACGA TCAGGTTGCG
GTGGTGCGTC CGCGCATCGA AGTCGAGCAA CTGATCGCGA TGGATAAGCC GGCGCCCTGG
CTGTGA
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| Protein sequence | MRHFDYRDGV LHAEGVSLAS IAQDVGTPFY CYSSATLERH YRVFTEAFAG LDALVCYAMK
ANSNQSVLRT LAKLGAGADV VSGGELQRAL AAGIPPSKIV FSGVGKTEAE LRAALAHDIK
CLNVESEPEL EQLSRIAVET GRTARISLRV NPDVDSGTHA KISTGKSENK FGIPIRHARE
VYARAAKLPG IQVTGVDVHI GSQIVDLAPM EAAFRKVAEF IHVLRGDGHT VSHVDFGGGL
GIPYYEDRDA PPEPFAYAEM VKRVTHNLGC TLLFEPGRMI VGNAGILVAK VIYVKHGDGK
TFVIIDAAMN DLIRPTLYEA YHEIIAVQQP APGVATMVAD VVGPVCETGD YLALDRKLPE
LKAGDLIAIM TAGAYGAVQA CTYNTRALVP EVLVKDDQVA VVRPRIEVEQ LIAMDKPAPW
L
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