| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5204 |
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| Symbol | |
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| ID | 6412904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5611612 |
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| End bp | 5614689 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642715094 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001994167 |
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| Protein GI | 192293562 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAAAA CGACAAAGTC CGCCGCTGCG ACGCCTGCCG CTTCCTCCGT CACGCCCCCT
GCCCCCGTCG GCGTCAAGCC GCCCGGCAAG GGCGACCACA TCTTCCTGGT CGACGGCTCG
TCGTACATCT TCCGCGCCTA TCACGCGCTG CCGCCGCTGA ACCGCAAGTC GGACGGGCTG
CAGGTCAATG CCGTGCTCGG CTTCTGCAAC ATGCTGTGGA AGCTGCTCCG CGACATGCCG
CCGGAGAACC GGCCGACGCA TCTCGCCATC ATCTTCGACA AGTCGGAAGT CACCTTCCGC
AACCATCTCT ACCCCGAATA CAAGGCGCAC CGGCCGCCGG CACCGGAGGA TCTGATCCCG
CAATTTGCCC TGATCCGCGA GGCGGTGCGG GCGTTCGACC TGCCGTGCCT GGAACAGTCC
GGTTTCGAGG CCGACGATCT GATCGCCACT TACGTGCGCG AGGCGTGCGA GGCCGGGGCC
ACGGCGACGA TCGTGTCGTC CGACAAGGAC CTGATGCAGC TCGTGACCGA CTGCGTGGTG
ATGTACGACA CCATGAAGGA CCGCCGCATC GGCGTGCCCG AGGTGATCGA GAAATTCGGC
GTGCCGCCCA ATAAGGTGGT CGAAGTCCAG GCGCTCGCCG GCGACAGCGT CGACAACGTG
CCGGGCGTGC CGGGCATCGG CATCAAGACC GCCGCGCAGC TGATCAACGA ATATGGCGAC
CTCGAAACCC TGCTGGCCCG CGCACCTGAG ATCAAGCAGC CGAAGCGGCG CGAGGCGCTG
ATCGAGAACG CCGAGAAGGC GCGGATCTCG CGCAAGCTGG TGCTGCTCGA CGACCATGTG
CAACTAGAGG TCCCGCTGGA AGAGCTCGCA GTGCACGAGC CCGACGCGCG AAAACTGGTG
GCATTCCTCA AGGCGATGGA ATTCACCACG CTGACGCGGC GCGTCGCCGA CTATGCGCAG
ATCGATCCGT CGGATGTCGA GGCGGAGACG GCGCTGAAGT CGGCCGTGCC GCCGCTTGCG
AAGAGCGCGC CCCCGAGCGG CGACCTGTTT GCGGGCCAAG AGCCCTCACC CCAGCCCTCT
CCCGCAGGCG GGGGAGGGAG CGCGCCGGCC TCGGGCCAAG GTGGTCCGCT GAATGCCGGC
CGCGGCCGCG ACGGCAGGCC GGGCGTCGTG CTGTCGCCGG AAACGCTGGT GGCGGCGCGG
GCCGAGGCCG CCCGCAAGAT TCCGGTCGAC CGCACTGCCT ACAAGACGCT GCACAGCCTC
GACGAACTGC AGGGCTTCAT CGCCCGCATC CACGACACCG GAATCGTCGC GCTTGAAGCG
GCCGCGACCT CGATCGATCC GATGCAGGCG GAGCTGATCG GCCTTGCCCT GGCGCTCGGC
CCGAACGACG CCTGCTACAT TCCGCTGCCG CATAAGCAGA GCGGCGACGG TGACGGCCTG
TTCGCCGCCG GCCTCGCGCC CGACCAGATC GGCCCCCGCG ACGCGCTCGA TGCGCTGAAG
CCGATCCTGG AATCCGCCGG CGTCGCCAAG GTCGGCTTCG CGATCAAATT CGCCGCGGTG
CTGCTGGCGC AGCACGGCCT GACCTTGCGC AACATCGACG ATCCGCAGCT GATGTCCTAC
GCGCTCGACG CCGGCCGCGG CAGCCACGCG CTCGATGCGC TGAGCGAAAG CAATCTCGGC
CACACCCTGC ACACGCTCAC CGAGCTGACC GGCACCGGCA AAAACAAGAT CGGCTTCGAT
CAGGTGCCGG TCGACCGTGC CACCGCCTAT GCGGCCGAAC GCGCCGACGT GAGCTTGCGG
CTGGCCCGCG TGCTGAAGCC GCGCCTCGTC GCAGGCAGCA TGACCGCGGT GTACGAGACG
CTGGAGCGCC CTCTTGTCGG CGTGCTGGCG CGGATGGAGC GGCGCGGCAT CTCGATCGAC
CGGCAGGTGC TGTCGCGGCT GTCGGCGGAT TTCGCCCAGA CCGCGGCGCG GATCGAGGCC
GAGATCCGGG AGCTCGCCGG CGAGGACATC AATATCGGCA GTCCCAAGCA GCTCGGCGAC
ATCCTGTTCG GCAAGATGGG CCTGCCGGGC GGCAGCAAGA CCAAGACCGG CGCGTGGTCG
ACCTCTGCGC AGGTGCTCGA CGAGCTCGCC GAACAGGGCC ACGAATTCCC GCGCAAGATT
TTGGACTGGC GGCAGGTCAG CAAGCTGCGC TCGACCTACA CCGACGCGCT GCCGAATTAC
GTGCATCCGC AGACCCACCG CGTCCACACC ACCTATGCAC TCGCCGCCAC CACCACCGGT
CGGCTGTCGT CGAACGAGCC GAACCTGCAG AACATCCCGG TGCGCACCGA GGATGGCCGC
AAGATCCGCC GCGCTTTCGT GGCGACGCCC GGCAACAAGC TGGTGTCGGC GGACTATTCG
CAGATCGAAC TGCGCCTCTT GTCCGAAGTC GCCGACGTGC CGGCGCTGCG CAAGGCGTTC
CAGGACGGCA TCGACATTCA CGCGATGACG GCGTCCGAGA TGTTCGGCGT GCCGGTCGAG
GGCATGCCGT CGGAAATTCG CCGCCGGGCG AAAGCGATCA ATTTCGGCAT CATCTACGGC
ATCTCGGCAT TCGGCCTCGC CAACCAGCTG AGCATCCCAC GCGAGGAAGC CGGCGCCTAC
ATCAAGCGCT ACTTCGAGCG CTTCCCAGGC ATCCGCGCCT ATATGGACGA GACCCGCGAT
TTCTGCCGGA CGCACGGCTA TGTCACCACG CTGTTCGGCC GCAAATGCCA CTACCCGGAC
ATCAAGGCGT CCAATCCGTC GATCCGCGCC TTCAACGAGC GCGCCGCCAT CAACGCAAGG
CTGCAAGGCT CCGCCGCCGA CATCATCCGC CGCGCCATGG TGCGGATGGA GGACGCACTC
GCCGAGAAGA AGCTCTCGGC GCAGATGCTG CTGCAGGTCC ACGACGAACT GATCTTCGAA
GTGCCGGAGG CCGAGGTGGA AGCGACGCTG CCGGTGGTCC GCTCGGTGAT GCAGGACGCG
CCGTTCCCGG CGGTGATCCT CAACGTCCCG CTGCAGGTGG ATGCGCGGGC GGCGGATAAC
TGGGACGAAG CGCATTAG
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| Protein sequence | MPKTTKSAAA TPAASSVTPP APVGVKPPGK GDHIFLVDGS SYIFRAYHAL PPLNRKSDGL
QVNAVLGFCN MLWKLLRDMP PENRPTHLAI IFDKSEVTFR NHLYPEYKAH RPPAPEDLIP
QFALIREAVR AFDLPCLEQS GFEADDLIAT YVREACEAGA TATIVSSDKD LMQLVTDCVV
MYDTMKDRRI GVPEVIEKFG VPPNKVVEVQ ALAGDSVDNV PGVPGIGIKT AAQLINEYGD
LETLLARAPE IKQPKRREAL IENAEKARIS RKLVLLDDHV QLEVPLEELA VHEPDARKLV
AFLKAMEFTT LTRRVADYAQ IDPSDVEAET ALKSAVPPLA KSAPPSGDLF AGQEPSPQPS
PAGGGGSAPA SGQGGPLNAG RGRDGRPGVV LSPETLVAAR AEAARKIPVD RTAYKTLHSL
DELQGFIARI HDTGIVALEA AATSIDPMQA ELIGLALALG PNDACYIPLP HKQSGDGDGL
FAAGLAPDQI GPRDALDALK PILESAGVAK VGFAIKFAAV LLAQHGLTLR NIDDPQLMSY
ALDAGRGSHA LDALSESNLG HTLHTLTELT GTGKNKIGFD QVPVDRATAY AAERADVSLR
LARVLKPRLV AGSMTAVYET LERPLVGVLA RMERRGISID RQVLSRLSAD FAQTAARIEA
EIRELAGEDI NIGSPKQLGD ILFGKMGLPG GSKTKTGAWS TSAQVLDELA EQGHEFPRKI
LDWRQVSKLR STYTDALPNY VHPQTHRVHT TYALAATTTG RLSSNEPNLQ NIPVRTEDGR
KIRRAFVATP GNKLVSADYS QIELRLLSEV ADVPALRKAF QDGIDIHAMT ASEMFGVPVE
GMPSEIRRRA KAINFGIIYG ISAFGLANQL SIPREEAGAY IKRYFERFPG IRAYMDETRD
FCRTHGYVTT LFGRKCHYPD IKASNPSIRA FNERAAINAR LQGSAADIIR RAMVRMEDAL
AEKKLSAQML LQVHDELIFE VPEAEVEATL PVVRSVMQDA PFPAVILNVP LQVDARAADN
WDEAH
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