| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5138 |
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| Symbol | |
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| ID | 6412832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 5525469 |
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| End bp | 5526215 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642715022 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001994101 |
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| Protein GI | 192293496 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGAC ATGCCATCGT CACCGGAGCC AGCCGCGGCA TCGGACGCGC CATCGCGCTC
GGCCTTGCCC AGCGCGGCTA CGACCTCGCC CTCACCGATA TCGCCGCACA GGAAAGCGTG
CTGCGTGAGA CTGTCGAAGA GGTGAAGCAG CTCGGCCGCA AATGCATTCC GATCCTCGCC
GACGTCAGCA AGATCGAGGA TTGCCAGCGT TCGGTGACCG AGGCGGTCGC CGGACTCGGC
CACGTCGACG TGCTCGTCAA CAATGCCGGG ATCCTGCGGC TGGCGATGAT CGACGAGACC
ACGCCCGAGC ATTGGGATCA GACCTTCGCG GTCAACGTCC GCGGCGTGTT CCAGATGACC
CAGGCGGTGG TCGTGCACAT GAAGGAGCGG CGCTACGGCC GCATCGTCAA TATTGCGTCG
CTGGCCGCGC GCACCGGCGG TCCCGGCCAG TCGCACTACG CCGCGTCGAA ATCCGCCGTG
GTCGGTTTCA CCCGCGTCTC GTCGATGGAG TTCGGCGGCC ACGGCATCAC CGTGAATGCG
GTCTGCCCCG GCATCATCCA GACCGAAATG GGCCGCAACA ACCTGCGCGA TCCGGAGCGG
GTCACGTATT TCGAGAAGAT CACCGACCTG CATCGGCTCG GCGAGCCGGA AGACGTCGTC
GGCCCGGTCG CGTTCTTCGC ATCGGACGAT TCGGCCTTCG TCACCGGCCA GGCGCTCAAT
GTCGATGGCG GCATCTTCTA CAGCTAA
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| Protein sequence | MTRHAIVTGA SRGIGRAIAL GLAQRGYDLA LTDIAAQESV LRETVEEVKQ LGRKCIPILA
DVSKIEDCQR SVTEAVAGLG HVDVLVNNAG ILRLAMIDET TPEHWDQTFA VNVRGVFQMT
QAVVVHMKER RYGRIVNIAS LAARTGGPGQ SHYAASKSAV VGFTRVSSME FGGHGITVNA
VCPGIIQTEM GRNNLRDPER VTYFEKITDL HRLGEPEDVV GPVAFFASDD SAFVTGQALN
VDGGIFYS
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