| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_5052 |
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| Symbol | |
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| ID | 6412746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 5434744 |
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| End bp | 5436306 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714937 |
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| Product | protease Do |
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| Protein accession | YP_001994016 |
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| Protein GI | 192293411 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.610685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGGCG ACCATTTCGA CCACGTATCA GCTCAAACCG AGGCTCACAT CCGCAAGGTG
TTGAGGCCGC GGCGTCTCTC GCTGTTGGCT TCCGCTGCCG GCTTGAGCAT GGTGGTGGCG
CTCGGCGGCG CCGGATTTCT CACCCGCGAG ATGCCGTCGC TGACGTCGCC GGCCTATGCG
GCTGAAAACG GCAAGCCGGC GCCCGCCGGG TTCGGCGATC TGGTCGACAA GGTCAAGCCG
GCAGTGATTT CGGTGCGGGT CAAGATCGAC GACGATCGCC AGACCACGCC GCTGGTGCGT
GACGATGGTG ACGGCGATCA GATGCAGACG CCGCGGGGCC TCGCGCCGTT CCAGCAGTTC
GAGCGTCAGT TCGGCTTCCG CGGTCCTGAA GGCATGCCGA AGCGGCACCA GATGATCACC
GGCGAAGGCT CCGGCTTCTT CATCACCGCC GACGGCTACG CGGTCACCAA TAATCACGTG
GTCGATCACG CCAAGTCGGT GCAGGTGACG ACCGACGACG GCACTATCTA CACCGCCAAG
GTCGTCGGCA CCGACGACAA GACCGATCTG GCGCTGATCA AGGTCGACGG CAAAACCGAT
TTTCCGCACG TCAACTTCGC CGATGCGCCG GCGCGGGTCG GCGATTGGGT GATCGCTGTC
GGCAATCCGT TCGGCCTCGG CGGCACGGTG ACGGCGGGCA TCGTCTCGGC GCGCGGTCGT
GACATCGGTT CGGGCCCCTA TGACGACTAC GTGCAGATCG ACGCGCCTAT CAACAAGGGC
AACTCCGGCG GTCCGGCGTT CGACACCAAT GGCAATGTGA TCGGCGTCAA CACCGCGATC
TATTCGCCAT CGGGCGGCTC GGTCGGCATC GGCTTCGATA TTCCGGCGGC GACCGCGAAG
CTGGTGGTGT CGCAGCTCAA GGACAAGGGC TACGTCACCC GCGGCTGGCT CGGCGTGCAG
GTGCAGCCGG TCACGGCGGA GATCGCCGAC AGTCTCGGCA TGAAGCAGGC CCGCGGCGCG
CTGGTCGATA GTCCGCAGGA CGGCAGCCCG GCCGCGAAGG CGGGCATCAA GGCCGGCGAT
GTGATCACCG CGGTCGACGG CAAGGAGGTC AAGGACTCCC GCGCGCTCGC CCGCACCATC
AGCACGCTGG CACCGGGCTC CTCGGTGAAG CTCGACGTGC TGCACAACGG CCAGTCCAAG
ACGATGGATC TGACGCTCGC CGAAATGCCC GGTGATCATC AGAAGGTCGC CGACAGCAGC
GGCGATCGCG ACGCTACCCG TCCGTATCTC GGCCTGCGCG TGGCACCGGC CAGCGAAGTC
GACGGTGCCG GCAAGAACGG GGTGGTCGTT ACCGGTGTCG ATCCGGACGG GCCGGCCGCC
GACAAGGGCC TGCGCACGGG TGATGTCATC CTCGACGTCG GCGGCAAGGC GGTGACCAAC
ACCGGCGATG TCCGCAACGC GCTCACACAG GCCGGCAAGG ACGGCAAGAA GACCGTGCTG
ATGCGGGTGA AGACGGCGGA TTCGGCGGCG CGCTTTGTCG CGGTGCCGAT CGCGAAGGGC
TGA
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| Protein sequence | MEGDHFDHVS AQTEAHIRKV LRPRRLSLLA SAAGLSMVVA LGGAGFLTRE MPSLTSPAYA
AENGKPAPAG FGDLVDKVKP AVISVRVKID DDRQTTPLVR DDGDGDQMQT PRGLAPFQQF
ERQFGFRGPE GMPKRHQMIT GEGSGFFITA DGYAVTNNHV VDHAKSVQVT TDDGTIYTAK
VVGTDDKTDL ALIKVDGKTD FPHVNFADAP ARVGDWVIAV GNPFGLGGTV TAGIVSARGR
DIGSGPYDDY VQIDAPINKG NSGGPAFDTN GNVIGVNTAI YSPSGGSVGI GFDIPAATAK
LVVSQLKDKG YVTRGWLGVQ VQPVTAEIAD SLGMKQARGA LVDSPQDGSP AAKAGIKAGD
VITAVDGKEV KDSRALARTI STLAPGSSVK LDVLHNGQSK TMDLTLAEMP GDHQKVADSS
GDRDATRPYL GLRVAPASEV DGAGKNGVVV TGVDPDGPAA DKGLRTGDVI LDVGGKAVTN
TGDVRNALTQ AGKDGKKTVL MRVKTADSAA RFVAVPIAKG
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