Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4944 |
Symbol | |
ID | 6412635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 5326034 |
End bp | 5327494 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642714826 |
Product | Pyridoxal-dependent decarboxylase |
Protein accession | YP_001993908 |
Protein GI | 192293303 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.326969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCGACG CGGTCCGCGC CGGCGCGAAT GCCGGCGCAA CGAGCCTCGA TCCTGACAAT TGGGACGCGC TGCGCGCCGA TGCGCATCGC ATGCTCGACG ATATGCTCGA CTACATCGCG GACGTGCGCG ACCGTCCGGT GTGGCAGCCG ATCCCGCCCG CGGTGCGCGT CGGCTTCGCC GAACCGCTGC CGCGCCAGGG CACGCCGCTA CCCGAGGTGT ATCGCCGTTT CACCGAAGAG ATCGCGCCTT ACGCCACCGG CAACGTCCAT CCGGGCTTCA TGGGCTGGGT GCACGGCGGC GGCACTGCGG TGGGGATGCT GGCCGAAATG CTGGCGGCCG GCCTCAATGC CAATTGCGGC GGCCGCGATC ACATCGGCAT CGAGGTAGAA CGCCAGATCG TGCGCTGGCT GCGCGAACTG TTCGGCTTTC CGCAAACCGC CAGCGGCGTG TTCGTCACCG GCTCGTCGAT GGCGAACTTC ATGGCGCTGT TGGTCGCGCG CACCGCCGCG GTTGGCCCCC AGGTGCGCGA GGGCGGGCTG CCGGGCGAAC GGCTCACTGC TTACGCTTCC GCAGCGGCGC ACGGCTGCGT GGTGCAGGCC GCCGATCTGG CCGGGCTCGG CCGCGGCGCG CTGCGGCGGA TTCCATTCGG CAAGGATCAC CGCATCGATA TCGACGCGCT GAAGCGGCGG ATCGCGGAAG ATCGCGCTGC CGGCTGCCAA CCGTTCCTGG TGACCGGATC GGCCGGCACC GTCGATGTCG GCGCGATCGA CGATCTCGCC GCACTCGCCG AGCTGTGCCG CGACGAAGGA CTGTGGTTTC ACGTCGACGG CGCCTATGGC TCGCTCGGTA TGCTGTCGGA CGAAATCGCG CCGAAGCTGA AGGGCCTGTC GGAGGCGGAT TCGATTGCGC TCGACTTCCA CAAATGGGGT CAGGTCAACT ACGACGCCGG CTTCCTGATC GTGCGCGACG GCGAGCAGCA TCGTGATACG TTCGCGGCGC CGGCCGCTTA CTTGCGACGC GAAACCCGCG GCCTCGCCGG CGGCTCGCCG TGGCCGTGCG ACTACGGCCC CGACCTGTCG CGGGGTTTTC GCGCGCTGAA GACCTGGTTC ACGCTGAAGA CCTTCGGCGC CGACCGGATG GGCGCGATGA TCGCCCAAAC CTGCAAGGTG GCGCGCTATC TCGAAGCCCG TGTCGAGCGC GAGCCACAGC TCGAGATGCT GGCGCCGGTG ACGCTGAACA TCGTCTGCTT CCGTTATCGC GCCGCACCGA ACGTGATGGA CTCGCTCAAC GCCGAGATCG TCGTCGACCT GCACGAATCC GGCATCGCTG CGCCGTCCTC CACCACCATC GACGGCGCAT TGGCGATCCG CGCCGCGATC GTCAACCACC GCACGACGTT TGCGGATGTC GACAAGATGG TGGATGCGGT GCTCAGGTTC GGCAAAGCGA GAGTCGGATA G
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Protein sequence | MSDAVRAGAN AGATSLDPDN WDALRADAHR MLDDMLDYIA DVRDRPVWQP IPPAVRVGFA EPLPRQGTPL PEVYRRFTEE IAPYATGNVH PGFMGWVHGG GTAVGMLAEM LAAGLNANCG GRDHIGIEVE RQIVRWLREL FGFPQTASGV FVTGSSMANF MALLVARTAA VGPQVREGGL PGERLTAYAS AAAHGCVVQA ADLAGLGRGA LRRIPFGKDH RIDIDALKRR IAEDRAAGCQ PFLVTGSAGT VDVGAIDDLA ALAELCRDEG LWFHVDGAYG SLGMLSDEIA PKLKGLSEAD SIALDFHKWG QVNYDAGFLI VRDGEQHRDT FAAPAAYLRR ETRGLAGGSP WPCDYGPDLS RGFRALKTWF TLKTFGADRM GAMIAQTCKV ARYLEARVER EPQLEMLAPV TLNIVCFRYR AAPNVMDSLN AEIVVDLHES GIAAPSSTTI DGALAIRAAI VNHRTTFADV DKMVDAVLRF GKARVG
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