| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4934 |
|---|
| Symbol | |
|---|
| ID | 6412625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 5315045 |
|---|
| End bp | 5316673 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642714816 |
|---|
| Product | putative acyl-CoA synthetase |
|---|
| Protein accession | YP_001993898 |
|---|
| Protein GI | 192293293 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.115365 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGGAC TGATGCAAGA CTGGCCTTTG CTGTGTCATC GGATCATCGA GCACGCGGCC
CGGATCCACG GCAACCAGGA GGTGGTCACC CGGTCGGTCG AGGGGCCGAT CGTCCGCACC
ACCTATGCGC AGATCCATCA GCGGGCACTG AAAGTCAGCC AGATGTTGGA CCGCGCCGGC
ATCAAGCTCG GCGACCGCGT TGCGACGATC GCCTGGAACA CCGCCCGGCA TCTGGAATGC
TGGTACGGCA TTATGGGAAT CGGCGCGATT TGCCATACGG TCAATCCGCG GCTTTTTCCG
GACCAGATCG CCTGGATCGT GAATCACGCC CAGGACCGCG TGATGATCAC CGATCTCACC
TTCATCCCGG TGCTGGAGAA GATTGCCGAC CAGATCCCGA GCGTGGAGCG CTTCGTGGTG
CTCACCGACG CCGAGCATAT GCCGCAGACC ACGCTGAAGA ACGCGATCGC GTATGAAGAG
TGGCTGAAGG AAGCCGACGG CGACTTCGAG TGGAAGGCCT TCGACGAGAA CACCGCGGCG
GCGATGTGCT ACACCTCGGG CACCACGGGT GATCCGAAGG GCGTGCTGTA TTCGCACCGC
TCCAACGTGC TGCACGCGCT GATGGCCAAC AACCCCGACG CGCTCGGCAC CCGCGCCGCC
GACACCATGC TGCCGGTGGT TCCGCTGTTC CACGCCAATA GCTGGGGCAT CGCGTTCTCG
GCGCCGTCGA TGGGCACCAA GCTGGTGATG CCCGGCGCCA AGCTTGACGG CGCCTCGGTG
TACGAGCTGC TGTCGACCGA GAAGGTCACC CACACGGCCG GCGTGCCGAC CGTCTGGCTG
ATGCTGCTGC AATACATGCA GAAGGAAAAG CTGACGCTGC CGCATCTGAA GATGGTGGTG
TGCGGCGGCT CGGCGATGCC GCGCTCGATG ATCAAGGCGT TCGTCGACAT GGGCGCGGAA
GCGCGCCACG CCTGGGGCAT GACCGAGATG AGCCCGCTCG GCACGCTCGC CACGCTGAAG
CCGCCGTTCG ACCAGACCAC CGGCGACGCC CGGCTCGACG TGCTGGCGAC GCAAGGCTAC
CCGCCGTTCG GTGTGCAGAT GAAGATCACC GACGATGCCG GCAAGGATGT CGACTGGGAT
GGCAAGACCT TCGGCCGGCT CAAGGTGTCG GGACCGGCGA TCGCCAAGGC GTACTATCGG
GTCGACAAGG AGATCCTCGA CGATGCCGGC TTCTTCGACA CCGGCGACGT CGCGACGATC
GACCAGGACG GCTACATGCG GATCACCGAC CGCTCCAAGG ACGTGATCAA GTCCGGCGGC
GAGTGGATTT CCTCGATCGA CCTGGAAAAC CTCGCGGTCG GCCACCCCAA GGTGGCGGAA
GCCGCGGTCA TCGGCGTGTA TCACCCCAAA TGGGACGAGC GCCCGCTGCT GATCTGCCAG
CTCAAGCCCG ACGTCACCTG CACCCGCGAC GAGATCCTGC AATACATGGA TGGCAAGATC
GCCAAATGGT GGATGCCCGA CGACATCGTG TTCGTCGAAG CCATCCCGCA CACCGCGACC
GGCAAGATCC TGAAGACGGC ACTGCGCGAT CAGTTCAAGA CCTACACGCT GCCGGGCGCG
GCGGCGTAA
|
|---|
| Protein sequence | MLGLMQDWPL LCHRIIEHAA RIHGNQEVVT RSVEGPIVRT TYAQIHQRAL KVSQMLDRAG
IKLGDRVATI AWNTARHLEC WYGIMGIGAI CHTVNPRLFP DQIAWIVNHA QDRVMITDLT
FIPVLEKIAD QIPSVERFVV LTDAEHMPQT TLKNAIAYEE WLKEADGDFE WKAFDENTAA
AMCYTSGTTG DPKGVLYSHR SNVLHALMAN NPDALGTRAA DTMLPVVPLF HANSWGIAFS
APSMGTKLVM PGAKLDGASV YELLSTEKVT HTAGVPTVWL MLLQYMQKEK LTLPHLKMVV
CGGSAMPRSM IKAFVDMGAE ARHAWGMTEM SPLGTLATLK PPFDQTTGDA RLDVLATQGY
PPFGVQMKIT DDAGKDVDWD GKTFGRLKVS GPAIAKAYYR VDKEILDDAG FFDTGDVATI
DQDGYMRITD RSKDVIKSGG EWISSIDLEN LAVGHPKVAE AAVIGVYHPK WDERPLLICQ
LKPDVTCTRD EILQYMDGKI AKWWMPDDIV FVEAIPHTAT GKILKTALRD QFKTYTLPGA
AA
|
|---|
| |