| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4921 |
|---|
| Symbol | |
|---|
| ID | 6412612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5300426 |
|---|
| End bp | 5303065 |
|---|
| Gene Length | 2640 bp |
|---|
| Protein Length | 879 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642714803 |
|---|
| Product | ATP-dependent chaperone ClpB |
|---|
| Protein accession | YP_001993885 |
|---|
| Protein GI | 192293280 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.289151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTTG AAAAATATAC CGAACGTGTG CGCGGCTTCA TCCAGTCGGC GCAATCGCTG
GCGATGCGCG AGGGCCATCA ACAGTTCTCG CCGCTGCACA TTCTGAAAGT TCTGCTCGAC
GATTCCGAAG GGCTCGCGGG CGGTCTGATC GACCGTGCCG GCGGCAATTC GCGTGCGATT
CTGAAGGCGA CCGAAGAGGC GCTCGGCAAG ATGCCGAAGG TGTCCGGCTC GGGCGCAGGC
CAAGTCTACC TGGCTCCGGC GACCGCCCGG GCGTTCGACG CTGCCGAGAA GGCGGCCGAA
AAGGCCGGCG ACAGCTTCGT CACCGTCGAG CGGCTCCTGC TCGCGCTGTC GCTCGATAAG
GACAGCGAGG CCGGCCAGCT GCTCACCAAG GGCGGCGTCA CCCCGCAGAA CCTCAATGCC
GCCATCAACG CCCTGCGCAA GGGCCGCACG GCGGATTCCG CCACGGCCGA GAACGCCTAT
GACGCGCTGA AGAAATATGC CCGCGACCTC ACCCAGGCGG CGCGCGACGG TAAGCTCGAC
CCGGTGATCG GTCGCGACGA GGAGATCCGC CGCACGATTC AAGTCCTGTC CCGCCGCACC
AAGAACAACC CGGTACTGAT CGGCGAACCC GGCGTCGGTA AGACCGCGAT CGTCGAAGGC
CTGGCGCTGC GCATCCTCAA TGGCGACGTG CCGGAGAGCC TGAAGGACAA GAAGCTGCTG
GCGCTCGACA TGGGCGCGCT GATTGCCGGC GCGAAATATC GCGGCGAGTT CGAAGAGCGG
CTGAAGGCCG TGCTCAACGA GGTCACCGCG GCCGAGGGCG GCATCATCCT GTTCATCGAC
GAGATGCACA CCCTGGTCGG CGCCGGCAAG GCGGACGGCG CGATGGACGC GTCGAATCTG
CTCAAGCCCG CGCTTGCCCG TGGCGAGCTG CATTGCATCG GCGCGACCAC GCTGGATGAA
TATCGCAAGC ACGTCGAGAA GGACGCCGCA CTGGCGCGGC GCTTCCAGCC GGTGTTCGTG
TCCGAGCCGA CGGTCGAGGA CACCGTCTCG ATCCTGCGCG GCCTGAAAGA CAAGTACGAG
CAGCACCACG GCGTGCGCAT TGCCGACTCG GCGCTGGTGG CCGCCGTCAC GCTGTCGAAC
CGCTACATCA CCGACCGCTT CCTCCCCGAC AAGGCGATCG ACCTGATGGA CGAGGCCGCG
GCGCGGCTGA AGATGCAGGT CGACTCCAAG CCCGAAGAAC TCGACTCGAT GGACCGCGAG
ATCGTGCGGC TGAAGATCGA GCAGGAGGCG TTGAAGAAGG AAACCGATCC GGGCTCGAAG
GCGCGCCTGG TGACGCTGGA GAAGGAGCTT GCCGATCTCG AAGAGAAGTC GGCGGCGTTG
ACCCAGCGTT GGAGTGCCGA GAAGAACAAG CTGTCGGATG CCCAGAAGCT GAAGAGCGAA
CTCGACGCTC TGCGGATTGA ACTCGCCAAC GCGCAGCGCC GCGGTGAGTA TCAGCGCGCG
GGCGAGCTCG CCTATGGCCG GATTCCGGAG CTTGAGAAGA AGATCGCTGA GATCGAAGCC
AACGAGAACT CGGGCGCGAT GGTGGAGGAG GCGGTCACCG CCAATCACAT CGCCCAGGTG
GTGTCGCGCT GGACCGGCGT GCCGGTCGAC AAGATGCTCG AAGGCGAGAA GGAAAAGCTG
CTGCGGATGG AAGAGCAGCT CGGCCAGCGC GTGGTCGGGC AGTTCGAAGC CGTGCATGCG
GTCTCGACCG CGGTCCGCCG TGCTCGCGCC GGCCTGCAGG ACCCGAACCG TCCGATGGGC
TCGTTCATGT TCTTAGGCCC CACCGGCGTC GGCAAGACCG AGCTGACCAA GGCGCTCGCC
GAGTATCTGT TCGACGACGA GACCGCGATG GTCCGCATCG ACATGTCGGA GTTCATGGAG
AAGCACTCCG TGGCCCGGCT GATCGGCGCA CCTCCCGGCT ATGTCGGCTA CGACGAAGGC
GGTGTGCTGA CCGAAGCGGT GCGGCGCCGG CCCTACCAGG TGATCCTGTT CGACGAGATC
GAGAAGGCGC ATCCGGACGT GTTCAACGTG CTGCTGCAGG TGCTCGATGA CGGCCGCCTG
ACCGATGGTC AGGGCCGCAC CGTGGACTTC CGCAACACGC TGATCGTGAT GACCTCGAAC
CTCGGCTCGG AGTATCTGGT CAACCAGCCT GAGGGCGAGG ACACCGGCGC GGTGCGCGAG
CAGGTGATGG GGATGGTGCG GGCGCACTTC CGCCCCGAAT TCCTCAACCG CGTCGACGAG
ATCATCCTGT TCCACCGCTT GCAGAAGAGC GAGATGGGGC GGATCGTCGA CATCCAGTTC
GCGCGGCTCA CCAAGCTGCT CGAGGACCGC AAGATCGTGC TCGATCTCGA TGCTGCGGCC
CGCGACTGGC TCGCCGAGAA GGGCTGGGAT CCGGCTTACG GCGCCCGTCC GCTGAAGCGG
GTGATCCAGC GCAGCGTCCA GGACCCGCTC GCCGAGATGA TCCTGGAAGG CTCCGTCAAG
GATGGCGACC ACGTCGCGAT CTCGGCGGAA GGCGGCGTGC TGACCTTCAA CGGCAAGCCG
CCGCACACCG CCGAGGTCGA GCCGTTCACG GGTCGTCCGC CGAAGCGGAT GCTGAACTGA
|
|---|
| Protein sequence | MNVEKYTERV RGFIQSAQSL AMREGHQQFS PLHILKVLLD DSEGLAGGLI DRAGGNSRAI
LKATEEALGK MPKVSGSGAG QVYLAPATAR AFDAAEKAAE KAGDSFVTVE RLLLALSLDK
DSEAGQLLTK GGVTPQNLNA AINALRKGRT ADSATAENAY DALKKYARDL TQAARDGKLD
PVIGRDEEIR RTIQVLSRRT KNNPVLIGEP GVGKTAIVEG LALRILNGDV PESLKDKKLL
ALDMGALIAG AKYRGEFEER LKAVLNEVTA AEGGIILFID EMHTLVGAGK ADGAMDASNL
LKPALARGEL HCIGATTLDE YRKHVEKDAA LARRFQPVFV SEPTVEDTVS ILRGLKDKYE
QHHGVRIADS ALVAAVTLSN RYITDRFLPD KAIDLMDEAA ARLKMQVDSK PEELDSMDRE
IVRLKIEQEA LKKETDPGSK ARLVTLEKEL ADLEEKSAAL TQRWSAEKNK LSDAQKLKSE
LDALRIELAN AQRRGEYQRA GELAYGRIPE LEKKIAEIEA NENSGAMVEE AVTANHIAQV
VSRWTGVPVD KMLEGEKEKL LRMEEQLGQR VVGQFEAVHA VSTAVRRARA GLQDPNRPMG
SFMFLGPTGV GKTELTKALA EYLFDDETAM VRIDMSEFME KHSVARLIGA PPGYVGYDEG
GVLTEAVRRR PYQVILFDEI EKAHPDVFNV LLQVLDDGRL TDGQGRTVDF RNTLIVMTSN
LGSEYLVNQP EGEDTGAVRE QVMGMVRAHF RPEFLNRVDE IILFHRLQKS EMGRIVDIQF
ARLTKLLEDR KIVLDLDAAA RDWLAEKGWD PAYGARPLKR VIQRSVQDPL AEMILEGSVK
DGDHVAISAE GGVLTFNGKP PHTAEVEPFT GRPPKRMLN
|
|---|
| |