| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4863 |
|---|
| Symbol | |
|---|
| ID | 6412549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5227985 |
|---|
| End bp | 5228953 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642714740 |
|---|
| Product | riboflavin biosynthesis protein RibF |
|---|
| Protein accession | YP_001993827 |
|---|
| Protein GI | 192293222 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0196] FAD synthase |
|---|
| TIGRFAM ID | [TIGR00083] riboflavin kinase/FMN adenylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.22731 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCT TTGCCGTAAT CCGCGACGAT ACGCCGACGG CCGCGATCCC GAAGGGCGCG
GTGGTGGCGA TGGGCAATTT CGACGGCGTG CACCGCGGCC ATCGCGCCGT GATTGGCGCC
TGCCTGGACA TGGCGCGGAC CAAGAAGGCG CCCGCTCTGG CGGTGACGTT CGAGCCGCAT
CCGCGCAAGT TCTTCAGCCC CGACGTCCCG CAATTCCGGC TGACCGACGA GACCGCCAAG
CTGCGGCTGC TGGCGGGGAC CGGGCTCGAC GGCGCGGTGA TCCTCAGCTT TGACGCCCGT
CGTGCGTCCA CCACGGCGCA TGATTTCATC CAGCACGAGC TGATCGGCCG GCTCGGGGTG
CAGGGCATCG CGATCGGCTA CGATTTCCAC TTCGGCAAGG GCCGCGGCGG CTCGCCGTCG
ATGCTGGTCG CCGAAGCGCC GTCGCTCGGG ATCGAGGTCG ACGTCCAGCC GCATGTCGAT
TTCGGCGACC ATCCGGTGTC GTCGAGCGCG ATCCGCAAGT GCCTGGAGGA GGGCCACATC
GCAGCCGCCA CCGAGATGCT CGGTGGGCCG TGGTTCGTCA CCGGCGAGGT GATCCATGGC
GACAAGCGCG GCCGCGACCT CGGCTACCCC ACCGCCAATA TCCGGCTCGA TCCGCAATGC
AGCCTGAAGC ACGGCATCTA TGCGGTGCGG GTCGGCCGCG GCGGTAGGCA CTACGACGCG
GTGGCGAATT TCGGCCGCCG CCCGACTTTC GACAACGGCG CGCCGCTGCT CGAAGTGTTC
GTGTTCGATT TCAATGAGCC CCTATACGGC GAGACGCTCG ACGTCGCCTT CATCGCCTTC
ATCCGCGACG AGGAGAAGTT CGAGAGCATC GAGGCGCTGA TCCGGCAAAT GGACGACGAC
TCCGCCCGCG CCCGCGCGGC ACTCGCCGCC GACCACGGTG CGTTCCCCAA GCTCGGCGCG
CTGCGATGA
|
|---|
| Protein sequence | MTGFAVIRDD TPTAAIPKGA VVAMGNFDGV HRGHRAVIGA CLDMARTKKA PALAVTFEPH
PRKFFSPDVP QFRLTDETAK LRLLAGTGLD GAVILSFDAR RASTTAHDFI QHELIGRLGV
QGIAIGYDFH FGKGRGGSPS MLVAEAPSLG IEVDVQPHVD FGDHPVSSSA IRKCLEEGHI
AAATEMLGGP WFVTGEVIHG DKRGRDLGYP TANIRLDPQC SLKHGIYAVR VGRGGRHYDA
VANFGRRPTF DNGAPLLEVF VFDFNEPLYG ETLDVAFIAF IRDEEKFESI EALIRQMDDD
SARARAALAA DHGAFPKLGA LR
|
|---|
| |