| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4803 |
|---|
| Symbol | |
|---|
| ID | 6412489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5170034 |
|---|
| End bp | 5170870 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642714681 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001993768 |
|---|
| Protein GI | 192293163 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.742777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCGA CCAAGCGCGC CGCGTGTCTG ATCGGCTGGC CGGCGGCGCA TTCGCGCTCG
CCGCTGATCC ATCACTATTG GCTGCGCCGG CTCGGCATCG AGGGCGGCTA CTCGATCGAA
GCGGTACCGC CGGAAGGCTT TGCCGAATTC GTGCTGCACC TGAAGACGCA CGGCTATGTC
GGCGCCAACG TCACCATCCC GCATAAGGAA CGCGCGCTGC AGCTCACTGA GCCCGACGAG
CGCGCCCGCG CCGTCGGCGC CGCCAACACG CTGTACTACG ACGGCGATCT GTTGCGCTCG
ACCAACACCG ACATCGAAGG CTTCATCGGC AATCTCGACG CCTCGGCGCC GGGCTGGGAT
CGCTCCCCGC ACGCCGTTGT GCTCGGCGCC GGCGGCTCGT CGCGCGCGGT GGTGTTCGGC
CTGCTGGAGC GTGGCGTGCA GCGGATCGCG CTCGCCAACC GTTCGATCGA GCGGGCGCAG
GCGCTGCGCG ATCTGTTCGG CGAACGCGTG GTGCCGATAG CGTGGAGTGA CATCCCGGCC
GCGCTGCCGG GCGCGGGCCT GTTGGTCAAC ACCACCTCGC TCGGCATGAA GGGACAGCCT
CCGCTTCAGA TCGACCTGTC GGCGCTGCCG GCGGACGCGG TGGTTTCGGA CCTCGTCTAT
GTGCCGCTGG AGACCGATCT GCTCGCCGCC GCCAAGGCGC GCGGCCTGCG CACCGCGGAC
GGTCTCGGCA TGCTGCTTCA CCAGGCGGTG CGCGGATTCG ATCTGTGGTT CGGGGCGCGG
CCGCACGTCA CCGCGGAGCT GCGGGCCCTG GTCGAGGCCG ATCTGGCCCC GAAGTAA
|
|---|
| Protein sequence | MAATKRAACL IGWPAAHSRS PLIHHYWLRR LGIEGGYSIE AVPPEGFAEF VLHLKTHGYV
GANVTIPHKE RALQLTEPDE RARAVGAANT LYYDGDLLRS TNTDIEGFIG NLDASAPGWD
RSPHAVVLGA GGSSRAVVFG LLERGVQRIA LANRSIERAQ ALRDLFGERV VPIAWSDIPA
ALPGAGLLVN TTSLGMKGQP PLQIDLSALP ADAVVSDLVY VPLETDLLAA AKARGLRTAD
GLGMLLHQAV RGFDLWFGAR PHVTAELRAL VEADLAPK
|
|---|
| |