| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4751 |
|---|
| Symbol | ispH |
|---|
| ID | 6412437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 5116698 |
|---|
| End bp | 5117660 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642714630 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001993717 |
|---|
| Protein GI | 192293112 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCA AATCGCCGCT GAAAATCGTG TTGTGCTCGC CGCGCGGGTT CTGCGCCGGC
GTGGTGCGGG CGATCGATAC CGTCGAACGG GCGCTCGCGC TGTACGGCGC CCCGGTTTAT
GTCCGGCACG AGATCGTCCA TAACAAATAC GTGGTCGACA GCCTGCGCGC CAAGGGCGCG
ATTTTCGTCG AGGAGCTGGA AGAGATTCCG GACACCAAGG CGCCGGTGGT ATTCTCCGCC
CACGGCGTGC CGAAGTCGGT GCCGGAACAC GCGATGTCGC GGAATTTCTT CTCGATCGAC
GCCACCTGCC CGCTGGTCAC CAAGGTGCAC CGCGAGGCTG CGATCCATTT CAAGCGCGGC
CGCGAGATCC TGCTGATCGG CCATTCCCAC CACCCCGAAG TGGTCGGCAC CCTCGGCCAG
CTCCCGGCCG GCGCGGTGAC GCTGATCGAG ACCGCGGCCG ACGCCGAGGC GTATCAGCCG
AAGGACCCCA ACAACCTCGC CTTCGTCACC CAGACCACGC TGTCGATCGA CGACACCGCC
GGCATCGTCA CGGTGCTGCG CGAGCGCTTC CCGAACATCT CCGGGCCGCA CAAGGAAGAC
ATCTGCTACG CCACCACCAA CCGCCAGGCG GCGGTGAAGA AGGTGGCGCC GGTGGTCGAC
GCCATGATCG TGGTCGGCGC GCCGAATTCG TCGAACTCGC AGCGGCTGCG CGAAGTCGCC
GAGCGCGAGG GCTGCAAGGT CGCGGTGCTG GTGCAGCGCG CCTCGGATCT CGACTGGAGC
CAGTTCGAGG GCATCAAGGT GCTCGGCCTC ACCGCCGGGG CCTCCGCCCC CGAGGTGATC
GTCGAGGAGA TCATGGGCGC CTTCGCCGAG CGGTTCGACC TGTCGGTCGA GACGGTGTCG
GCGGCGGAAG AAAACGAGTT CTTCCCGGTG CCGCGGGTGC TGCGCCCCGA CGCCGCGGAA
TAA
|
|---|
| Protein sequence | MLAKSPLKIV LCSPRGFCAG VVRAIDTVER ALALYGAPVY VRHEIVHNKY VVDSLRAKGA
IFVEELEEIP DTKAPVVFSA HGVPKSVPEH AMSRNFFSID ATCPLVTKVH REAAIHFKRG
REILLIGHSH HPEVVGTLGQ LPAGAVTLIE TAADAEAYQP KDPNNLAFVT QTTLSIDDTA
GIVTVLRERF PNISGPHKED ICYATTNRQA AVKKVAPVVD AMIVVGAPNS SNSQRLREVA
EREGCKVAVL VQRASDLDWS QFEGIKVLGL TAGASAPEVI VEEIMGAFAE RFDLSVETVS
AAEENEFFPV PRVLRPDAAE
|
|---|
| |