Gene Rpal_4744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4744 
Symbol 
ID6412430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5107621 
End bp5109420 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content65% 
IMG OID642714623 
Productcyclic beta-1,2-glucan ABC transporter 
Protein accessionYP_001993710 
Protein GI192293105 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR01192] glucan exporter ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCTGT TTCATCTCTA CACCCGCGTG CTGCAACTGC TCGGCAAGGA GGCGCGGCTC 
GGCTGGATTC TCGCCGTCGC CAATCTGCTG CTCGCCACCG CGCAATTCGC CGAGCCGATC
CTGTTCGGCC GCATCGTTGA CGTGATGAGC GGCAATCTCG CCACCGGCGC GCTGGTGCCG
GAGACGCGTT CGCCCTGGCC GCTGCTCGGC GCCTGGGTCG GCTTCGGCCT GTTCACCATC
ATGTGCTCGG CGCTGGTCGC GCTGCAAGCC GACCGGCTGG CCCATCGGCG GCGCCAGGCG
GTGCTGACCA GCTATTTCGA ACACATCCTG CAACTGCCGA TCAGCTTTCA CACCGGCACC
CACTCGGGCC GGCTGATGAA AGTAATGCTG CAAGGCACCG ACGCGCTGTG GCGGATGTGG
CTCGGCTTCT TCCGGGAGCA CTTCGCCGCC ATTCTGTCGC TGGTCGTGCT GCTGCCGCTG
TCGCTCTACA TCAATTGGCG GCTGGCGATC CTGTTGTTCG TGCTGTGCAT CGTGTTCACG
GTGCTGACCA CGCTGGTGGT GCACAAGACC TACGGCATGC AGGGTGAGGT CGAGGCACAA
TACAGCGACC TGTCGGCGCG CGCCTCCGAC GCGCTCGGCA ATGTCGCGCT GGTGCAGAGC
TTCGTTCGCG TCGACGCCGA GGTGCAGGGG CTGCGCAACA TCTCCGGCCG GCTGCTCGAG
GCGCAGATGC CGGTGCTGTC GTGGTGGGCG CTGGTGACGG TGATCACCCG CGCCTCCACC
ACCATCACGG TGCTGTCGAT CTTCGCGCTC GGCATCTATC TCAATCAGCA GGGCCTCACC
AGCGTCGGTG AGATCGTGAT GTTCGTCTCG TTCGCGACGC TGCTGATCCA GCGGCTCGAA
CAGGTGGTAA ACTTCATCAA CAACGTGCTG ATGGAAGCGC CCCGCTTGCG CGAGTTTATC
GCGGTGCTCG ATACCGTGCC GGCGGTGCGC GACCGAGCGG ACACGATCGA TTGCGGCCGG
CTGTCCGGCC TGGTCGAATT CCAGAATGTG TCGTTCTCCT ATGACGGCAA ACGGCCGGCC
ATCGAAGATC TGAGCTTCAC CGCCCTGCCC GGCGATACCA TCGCGCTGGT CGGCGCCACT
GGCGCCGGCA AGTCCACCGC GATCGCGCTG TTGCACCGTG CCTTCGATCC GCAGTCCGGC
GTGATCAAGG TCGACGGCAT GGACATCCGC GGTATCACGC TGGCCTCGCT GCGGCGGAAC
ATCGGCGTCG TGTTTCAGGA AGCGCTGCTG TTTGACCGCT CGATCGCCGA CAATCTGCGG
GTCGGCAAGC CGGACGCCAC GCCGGAAGAA CTGCGCCTCG CTGCAGAACG CGCGCAGGCG
CTGGAGTTCA TCGAGCGCAG CGACCACAAA TTCGACACCA ACGCCGGCGA GCGCGGCCGC
ATGCTGTCCG GCGGCGAACG GCAGCGACTG TCGATCGCCC GCGCGCTGCT GAAGGATCCT
CCGATCTTGA TCCTCGACGA GGCGACCTCG GCGTTGGACG CGGTGACCGA AGCCAAACTC
AACCTCGCGC TCGACGAGGT GATGAAAGGC CGCACCACCT TCGTGATCGC GCACCGGCTG
TCCACCATCC GTGATGCCAC CCGTATTCTG GTGTTCGACA ACGGCAAAGT GATCGAAAGC
GGAACGTTCG ATGAACTGGT GGCGCGCGGC GGTGCATTCG CGCAATTGGC ACGGGCGCAG
TTCATGGTGC AGGAGAGCGC GCGCTCGGCG ATGAGCTCGG CAGCCGACGC ACAACTCTGA
 
Protein sequence
MSLFHLYTRV LQLLGKEARL GWILAVANLL LATAQFAEPI LFGRIVDVMS GNLATGALVP 
ETRSPWPLLG AWVGFGLFTI MCSALVALQA DRLAHRRRQA VLTSYFEHIL QLPISFHTGT
HSGRLMKVML QGTDALWRMW LGFFREHFAA ILSLVVLLPL SLYINWRLAI LLFVLCIVFT
VLTTLVVHKT YGMQGEVEAQ YSDLSARASD ALGNVALVQS FVRVDAEVQG LRNISGRLLE
AQMPVLSWWA LVTVITRAST TITVLSIFAL GIYLNQQGLT SVGEIVMFVS FATLLIQRLE
QVVNFINNVL MEAPRLREFI AVLDTVPAVR DRADTIDCGR LSGLVEFQNV SFSYDGKRPA
IEDLSFTALP GDTIALVGAT GAGKSTAIAL LHRAFDPQSG VIKVDGMDIR GITLASLRRN
IGVVFQEALL FDRSIADNLR VGKPDATPEE LRLAAERAQA LEFIERSDHK FDTNAGERGR
MLSGGERQRL SIARALLKDP PILILDEATS ALDAVTEAKL NLALDEVMKG RTTFVIAHRL
STIRDATRIL VFDNGKVIES GTFDELVARG GAFAQLARAQ FMVQESARSA MSSAADAQL