Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4549 |
Symbol | |
ID | 6412233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 4901465 |
End bp | 4902646 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642714429 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001993518 |
Protein GI | 192292913 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTCGCT ACACGCATGT CCTGCGCAGC GTCGCCGTCG GCGCGACGGC TTTGGCGCTG TCGAGCTTTT CGCTGATGCA CAGCGCGCTC GCGCAATCCA CCATCAAGCT CGGCTCGGTG CTGTCGATCA CCGGCCCCGC GTCCTTCCTC GGCGATCCAG AGGACAAGAC GCTGAAGATG TATGTCGACA AGATCAACGC CGCGGGCGGC GTCGACGGCA AGAAGATCGA ACTCGTCGTC TATGACGACG GCGGCGACGC CAACAAGGCC CGCACCTTCG CCACCCGCCT AGTCGAGGAC GACAAGGTGG TGGCGATGAT CGGCGGCTCG ACCACCGGCA CCACGATGGC GATGATCCCG GTGTTCGAGG AAGCGCAGAT CCCGTTCATC TCGTTTGCCG GCGCGGTCGA AATCATCGAC CCCGTCCGCA AATACGTGTT CAAGACCCCG CACACCGACA AGATGGCGTG CGAGAAGATC TTCGAGAACA TCAAGGCGCG CAAATTTACC AAGGTGGCGA TGATCTCCGG CACCGACGGC TTCGGCTCGT CGATGCGGGC GCAGTGCCTG AAGGTCGCGG CGAACTACGG CGTCAGCATC GTGGCCGAAG AAACCTACGG CCCGCGCGAC AGCGACATGA CGGCGCAGCT CACCAAGATC AAGGCCGCCC CGGGCGTCGA GGCAGTGGTC AATCCCGGCT TCGGCCAGGG CCCGGCGATC GTCACCCGCA ACTACGCGCA GCTCGGCATG TCGTCGACGC CGTTCTACCA GAGCCACGGC GTCGCATCGA AGAGCTTCAT CGAGCTCGCC GGCCCGGCGG CCGAAGGCGT GCGGCTGCCC GCCGCCGCGC TGCTGGTCGC CGACAAGCTG CCGGACAACG ATCCGCAGAA GAAGGTCGTC ACCGAGTACA AGGCGACTTA CGAAGACACC ACCAAGCAGC CGGTCTCGAC CTTCGGCGGC CACGCTTATG ACGGCCTCTA CATCCTGGTC GACGCGATGA AGCGGGCGAA GTCGACCGAT CCGAAGAAAG TGCGCGACGA GATCGAGGCC ACCAAGGGCT TCGTCGGCAC CGGCGGCATC GTCACCATGT CACCGACCGA TCACCTCGGC CTCGACCTGT CGGCGTTCCG GATGCTCGAG GTCAAGAACG GCGACTGGAC GCTGGTGCAG CCGGGAAGCT GA
|
Protein sequence | MSRYTHVLRS VAVGATALAL SSFSLMHSAL AQSTIKLGSV LSITGPASFL GDPEDKTLKM YVDKINAAGG VDGKKIELVV YDDGGDANKA RTFATRLVED DKVVAMIGGS TTGTTMAMIP VFEEAQIPFI SFAGAVEIID PVRKYVFKTP HTDKMACEKI FENIKARKFT KVAMISGTDG FGSSMRAQCL KVAANYGVSI VAEETYGPRD SDMTAQLTKI KAAPGVEAVV NPGFGQGPAI VTRNYAQLGM SSTPFYQSHG VASKSFIELA GPAAEGVRLP AAALLVADKL PDNDPQKKVV TEYKATYEDT TKQPVSTFGG HAYDGLYILV DAMKRAKSTD PKKVRDEIEA TKGFVGTGGI VTMSPTDHLG LDLSAFRMLE VKNGDWTLVQ PGS
|
| |