Gene Rpal_4508 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4508 
Symbol 
ID6412192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4854376 
End bp4855356 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content64% 
IMG OID642714390 
ProductADP-L-glycero-D-manno-heptose-6-epimerase 
Protein accessionYP_001993479 
Protein GI192292874 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.575287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTGG TCACCGGGGG CGCCGGGTTC ATCGGATCGA ATCTGGTCGC GGCGCTGAAC 
GAGGCCGGGC GGGCCGACGT GGCCGTGTCC GATTTCCTCG GCCATGACGG CAAATGGAAA 
AACCTTGCCA AGCGTCAGTT GGCCGATTAC GTGCCGCCGG CGGAACTCGC CGAATGGCTG 
AAGGGCCGCA AGCTCGACGC TGTATTCCAC ATGGGCGCGA TCTCCGCGAC CACCGCCACC 
GACGGCGACA TGGTGATGGA GAACAATTTC CGGCTGTCGC TGCGGCTGCT CGACTGGTGC 
ACCGAGACCG GCACGCCGCT GATCTACGCC TCGTCCGCGG CGACCTATGG CGATGGCGAA 
CACGGCTTCG AGGACGATTT CTCGCTGGTC GCGCTGAAGC AGCTGCGGCC GATGAATCTG 
TACGGCTGGA GCAAGCATCT GTTCGACCTG GTGGTAGCGG AGCGCTTAGC CAAGGGCGAC 
AAGCTGCCGC CGCAATGGGC CGGCTTGAAA TTCTTCAACG TGTTCGGCCC GAACGAGTAT 
CACAAGGATA CCATGGCCAG CGTGCTGGCG CGGCGGTTCG ACGACATCAA GTCCGGCCGG 
GTTGTGCAGT TGTTCAAGTC GCACCGAGAA GGCATCGCCG ACGGCGACCA GCGCCGCGAC 
TTTATCTATG TCGACGACGT CGTGCGGGTG ATGATGTGGC TGTTCGCTTC GCCCAGCGTC 
AGCGGCATCT TCAACGTCGG CACCAGCCAT GCCCGGAGCT TCCGCGACTT GATCCTGGCC 
GCCTATGCGG CGCTCGGCAC GCCGCCGCAG ATCGAGTACA TCGATATGCC GGAACAGATT 
CGCGGCAGCT ATCAGTATTT CACCCAGAGC GAGGGCGACC GGCTGCGTGC CGCTGGCTAT 
AATGGCGGCT TCACCCCGCT CGAAGAGGCG GTCGCGTCTT ACGTCACAGG TTACCTCGAC 
CGCAGCGATC GCTTCCGCTG A
 
Protein sequence
MLLVTGGAGF IGSNLVAALN EAGRADVAVS DFLGHDGKWK NLAKRQLADY VPPAELAEWL 
KGRKLDAVFH MGAISATTAT DGDMVMENNF RLSLRLLDWC TETGTPLIYA SSAATYGDGE 
HGFEDDFSLV ALKQLRPMNL YGWSKHLFDL VVAERLAKGD KLPPQWAGLK FFNVFGPNEY 
HKDTMASVLA RRFDDIKSGR VVQLFKSHRE GIADGDQRRD FIYVDDVVRV MMWLFASPSV 
SGIFNVGTSH ARSFRDLILA AYAALGTPPQ IEYIDMPEQI RGSYQYFTQS EGDRLRAAGY 
NGGFTPLEEA VASYVTGYLD RSDRFR