| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4426 |
|---|
| Symbol | |
|---|
| ID | 6412110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4752387 |
|---|
| End bp | 4755539 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642714308 |
|---|
| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
|---|
| Protein accession | YP_001993397 |
|---|
| Protein GI | 192292792 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATT TCTTTATCGC GCGGCCCGTG TTCGCATGGG TCGTTGCCAT CTTCATTATG
ATCGCCGGCG CGTTGGCGAT TCCGTTTCTG CCGGTGGCGC AATATCCCAA CATCGCGCCG
GCCAAGATCT CGGTTACTGC GAACTATCCG GGGGCGTCAT CCGAAGAAAT CTACCAGGGC
GTCGTCCGGC TGATCGAAGA TCAGCTCGCC GGCATTCCCG GCCTGATGTA CTTCGAGTCG
ACAACGGACG CGACCGGCCA GATCTCGATC GAGGTGTCGT TCCAGCCGGG GACGTCGCTG
GCGCAGGCGA CGGTGGATGT GCAGAACCGC ATCCGCCGGG TGGAGTCGCG GCTGCCCAGC
GCCGTGACAC AGCGCGGCAT TCTGGTCGAC GAAGCCTCCA GCACCTTCCT GATGTTCATC
TCGGTGCAGA CTACCGACGG CTCGCTCGAT AGCATCGCGG TCGGCGACTA CATCACTCGT
AATATCATCA GCGAGATCCG CCGGGTCGAG GGCGTTGGCA AGGCGCAGTT GTTCGGCACC
CAGCGGTCGA TGCGGGTGTG GATCGATCCG GACAGGCTGT TCGGCGTCGG CCTGACCGTC
AGCGACGTCT CAGCGGCGAT CGCCGCGCAG AACGCGCAGG TCGCAGCCGG GCGTATCGGT
GCGACGCCCA ATCCGGTGTC GCAGGAAGTC ACTGCGCCGG TCCTGGTCAA GGGCCAGCTC
GGCACGCCTG AGGAATTCGG CGCCATCGTG CTGCGCGCCA ATCGCGACGG CTCGTCGGTA
CGGTTGCGCG ATGTCGCCCG GGTCGAGGTC GGCGGCGAGG ATTACAATTC GGAGAGTCGG
CTGAACGGCC AGCCCGCCGC TTCGATCGGC GTTCAGTTGT CGGCGACTGC CAATGCGCTC
GCCACCTCCA GGGCCGTCAC TGCAAAGATG AAGGAGCTCT CGCAGTATTT CCCGAAAGGG
ATGACCTACG AGATTCCTTA CGATACCACC CCGTTCATCA AGGCGTCGAT CGAGAAGGTA
CTGTACACGC TCGCCGAAGC GATCGCGCTG GTGTTCGTGG TGATGTTCCT GTTCCTGCAG
AACATCCGCT ACACCCTGAT CCCGACCCTG GTGGTGCCGA TCGCGCTGCT CGGCACCTGT
GCGGTGATGT TCGCCACCGG CTTCTCGATC AACGTGCTGA CGATGTTCGC GATGGTGCTG
GCGATTGGCA TCCTGGTCGA CGACGCCATC GTGGTGGTCG AAAACGTCGA GCGCCTGATG
GCGACCGAGG GCCTGTCGCC GCGCGAGGCG ACCATCAAGG CGATGAAGCA GATCAAGGGC
GCGATCGTCG GCATCACGCT GGTGCTGACG GCGGTGTTCC TGCCGATGGC GTTCTTCCCC
GGCGCGGTCG GTATCATCTA TCGGCAGTTC AGTCTGACGA TGGTGGTGTC GATCCTGTTC
TCGAGCTTCC TGGCGCTGAC CCTGACGCCG GCGCTGTGTG CGACGTTCTT GAAGCCGGTA
CCCGACGATC ACCACGAGAA GGGCGGCTTC TTCGGCTGGT TCAACCGGAC TTTCGCACGC
ATCGCGGGCC GCTATCGCAA TGGCGTCGGC TGGGCGACCG GACGGACCGG GCGGCTGATG
GTGGTGTATC TGGCGCTGCT GGCGGGGCTC GGCTGGGCTT ACTTGCGGCT GCCCGCGTCA
TTCCTGCCGA CCGAGGATCA GGGATATCTG ATCGTCGACA TGCAGGCGCC GACCGAAGCG
ACGCAGACCC GCGCGATGAC GTCGATCGAG CAGGCCGAGA AGGTGTTCCT CGCCGATCCC
AGCGTTTCGC AGGTGTTCAC CGTCTCGGGC TTCAGCTTCT CCGGTAACTC GCAGAGCGCA
GCGGTGGCGT TTGTGACGTT GAAGGATTGG AGCGAGCGCG GCCACGACAG CGCAGGTGCG
ATCGCCCGGC GCGCCAATGT CGAACTGGCG AAGATCGGCG ACGCCGCGGT GATGGCGTTC
GAGCCGCCGC CGATCGACGG ACTCGGCAAT TTCACCGGCT TCACCTTCCG CCTGCAGGAT
CGTGGCAGCC GCGGTACCGC TGCACTCGAC GATGCCGCGA CGCGCCTGAC TGCGGCCGGC
GCCGCCAGTC CGGTGCTGAC CGGCGTGCGG GTCGAGGGGC TGGCCAATTC GGCGCAGCTG
CATCTGGTGA TCGACCGTGA GAAGGCGAAC GCGCTCGGCG TGTCATTTGC CGACATCAAC
GCCACCATCA CTGGCAGCCT CGGCTCTGCC TATGTCAACG ACTTCCCCAA CGCCGGCCGG
ATGCAGCGCG TCACCATCCA GGCGCAGGAC GATCGCCGCA TGCAGACGGA CGATCTGCTC
AAGCTCAACG TCCGCAATGC CAGTGGACGG ATGGTGCCGC TGTCGGCATT CGCGCGGACC
GAATGGTCGA AGGGGCCGAT CCAGGTGATC GGCTTCAACG GCTATCCTTC GGTGCGTTTT
GCCGGCGACG CCGCACCTGG GCATTCCTCG GGTGAAGCCA TCGCCGAGAT GGAACGGCTG
GCCAAGCAGT TGCCGAGTGG TTTCGGCTTC GAATGGGCTG GGCAGTCGTT GCAGGAAATC
AAGTCCGGCA ATCAGGCGCC GTTCCTGCTC GGACTGAGCG TGCTGTTCGT GTTCCTGCTG
CTCGCGGCGC TGTACGAAAG CTGGTCGATC CCGCTGTCGG TGATGTTGGT CGTGCCCCTC
GGCGTGATCG GCGCGCTGTT GGCGGTGATG CTCCGCGACA TGCCGAACGA TATCTACTTC
AAGGTTGGCC TGATTGCGAT CATCGGCCTG TCCGCCAAGA ATGCGATCCT GATCGTCGAG
TTCGCCAAGG ACCTGCATGC CGAAGGAAAG TCGCTGCGCG AGGCAGCCAT CGAGGCGGCG
GCGGTCCGCT TCCGCCCGAT CATCATGACC TCGCTCGCCT TTATCCTCGG CGTCACGCCG
CTGGCGTTTG CGAGCGGCGT CAGCGCCGGC AGCCAGAACG CGATCGGCAC CGGCGTGTTC
GGCGGCATGC TGTCCGCCAC CGTGCTGGCA GTGTTGTTCG TGCCGGTGTT CTATGTCTTC
GTGCTGCAGA AAGTGGAGCA GCGGAAGGCG GCAGGCAGCA AGGGCGCGAC AGGCAAGGGC
GAGCCGCAAG CGAAACCGGT TGCGCGATCG TAG
|
|---|
| Protein sequence | MPDFFIARPV FAWVVAIFIM IAGALAIPFL PVAQYPNIAP AKISVTANYP GASSEEIYQG
VVRLIEDQLA GIPGLMYFES TTDATGQISI EVSFQPGTSL AQATVDVQNR IRRVESRLPS
AVTQRGILVD EASSTFLMFI SVQTTDGSLD SIAVGDYITR NIISEIRRVE GVGKAQLFGT
QRSMRVWIDP DRLFGVGLTV SDVSAAIAAQ NAQVAAGRIG ATPNPVSQEV TAPVLVKGQL
GTPEEFGAIV LRANRDGSSV RLRDVARVEV GGEDYNSESR LNGQPAASIG VQLSATANAL
ATSRAVTAKM KELSQYFPKG MTYEIPYDTT PFIKASIEKV LYTLAEAIAL VFVVMFLFLQ
NIRYTLIPTL VVPIALLGTC AVMFATGFSI NVLTMFAMVL AIGILVDDAI VVVENVERLM
ATEGLSPREA TIKAMKQIKG AIVGITLVLT AVFLPMAFFP GAVGIIYRQF SLTMVVSILF
SSFLALTLTP ALCATFLKPV PDDHHEKGGF FGWFNRTFAR IAGRYRNGVG WATGRTGRLM
VVYLALLAGL GWAYLRLPAS FLPTEDQGYL IVDMQAPTEA TQTRAMTSIE QAEKVFLADP
SVSQVFTVSG FSFSGNSQSA AVAFVTLKDW SERGHDSAGA IARRANVELA KIGDAAVMAF
EPPPIDGLGN FTGFTFRLQD RGSRGTAALD DAATRLTAAG AASPVLTGVR VEGLANSAQL
HLVIDREKAN ALGVSFADIN ATITGSLGSA YVNDFPNAGR MQRVTIQAQD DRRMQTDDLL
KLNVRNASGR MVPLSAFART EWSKGPIQVI GFNGYPSVRF AGDAAPGHSS GEAIAEMERL
AKQLPSGFGF EWAGQSLQEI KSGNQAPFLL GLSVLFVFLL LAALYESWSI PLSVMLVVPL
GVIGALLAVM LRDMPNDIYF KVGLIAIIGL SAKNAILIVE FAKDLHAEGK SLREAAIEAA
AVRFRPIIMT SLAFILGVTP LAFASGVSAG SQNAIGTGVF GGMLSATVLA VLFVPVFYVF
VLQKVEQRKA AGSKGATGKG EPQAKPVARS
|
|---|
| |