| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4407 |
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| Symbol | fliR |
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| ID | 6412091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4733769 |
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| End bp | 4734536 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642714289 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001993378 |
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| Protein GI | 192292773 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.605024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGCATCG ACCTGACCTT CCTGCCGGCG CTCGCCGCCA CCTTCATGCT GGTGTTCGCA
CGCATCGGCG CGATGGTGAT GCTGATGCCG ACGTTCGGCG AGAGCAACAT CCCGACGCGG
GTGAAGCTGT CGATCGCGCT ATTGCTGACG CTGATCATGC TGCCGCTGCA TCGATCGGCC
TATCAGATCG ATATGTCGTC GTTGACGCCG CTCTTGGTGC TGATGCTGCA GGAGATTGCG
GTCGGCATCG TGCTCGGCGC CACCGCAAGG GTGACGCTGT CGGCGCTGCA GGTCGCGGGC
GCGGTGATCG CCCAGCAGCT CGGGCTCGGC TTCGTCTCGG CGGTCGATCC GACGCAGGGC
CAGCAGGGCG TGGTGGTCGG CAACTTTCTG ACGATGCTCG GCGTCACGCT GCTGTTCGCC
ACCGACATGC ACTATCTGGT GATCCAGGCG CTGAGCGACA GTTACAAGGT GTTCGCGCCG
GGCGAATTGC TGCACACCGG CGACGTTGCG GCGCTGGCCA CCAAGGCGTT TGCGGCTGCG
TTCAAGCTCG GCCTGCAATT ATCGGCGCCG TTCCTGGTGT TCGGGCTGGT GTTCAACATC
GGGCTCGGCG TGCTGGCGCG GCTGATGCCG CAGATGCAGG TGTATTTCGT CGGCGTTCCG
CTTTCGATCG TGATCGGCTT CATCGTGCTT GCAGTGGTGC TGACCACGAT GATGGGCGCT
TTCCTCGGCT ATTTCGGCGG CGTGATGCAC GATCTGATGC CACGCTGA
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| Protein sequence | MRIDLTFLPA LAATFMLVFA RIGAMVMLMP TFGESNIPTR VKLSIALLLT LIMLPLHRSA
YQIDMSSLTP LLVLMLQEIA VGIVLGATAR VTLSALQVAG AVIAQQLGLG FVSAVDPTQG
QQGVVVGNFL TMLGVTLLFA TDMHYLVIQA LSDSYKVFAP GELLHTGDVA ALATKAFAAA
FKLGLQLSAP FLVFGLVFNI GLGVLARLMP QMQVYFVGVP LSIVIGFIVL AVVLTTMMGA
FLGYFGGVMH DLMPR
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