| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4297 |
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| Symbol | |
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| ID | 6411981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4625362 |
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| End bp | 4626555 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642714179 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_001993268 |
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| Protein GI | 192292663 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.430357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTTG CGACAGAAAC TCCGCCGTCG GCGCGGAGCT CCAGCGAGAA GCCCCGCCCG
CGCCCGGTGC GGACGGTGCG CTGGTTCATC ATCGTCGGAT TGCTGCTGGC GCTGCTGGTC
GGCGGCCTGG TCGGCTTCAA CGCTTTCCGC AACCATATGA TTGCGCAGTT CTTCGCCAAC
AACAAACCGC CGCCGATCAC GGTGACGGTC GCCGAGGCGA AGACCGAAGT GCTGCCCAAT
CTGTTGACCG CGGTCGGCGA TCTGGCTGCC GTGCATCAGG TCAACGTCAC CTCCGACGTC
TCCGGCCGCA TCACCGACAT CCTGTTTCAG GCTGGTTCGG AGGTGAAGCA GGGCACGCTG
TTGGTCAAGC TGTTCGACGA AACCGAGCAG GCCGATCTGG CGAACTACCG GGCGCAGGCC
AAGGTTGCCG AGCTGTCGCT CGATCGCGCC AAGCAGCTCG CCGCGCGGCA GTTCGGTCCG
CAGGCGACGG TGGACTCGGC GCAGGCCGCC TACGATCAGG CCAATGCCGG CATCGCCAAG
ACCGAAGCGT TGATATCGCA GAAGAAGGTG CGGGCACCGT TCGACGGCGT GCTCGGCGTG
CGCCACGTCG AAGTCGGCCA GTATCTCAGC GCCGGCACCC AGATCGTGAC GCTCACCGAC
CTGTCGCAGG TCTATGCCAA CATCACCGTG ACGGAAAAAG ACTCCGGCAC GCTGGCTGTC
GGTCAGGCCG TGCGGCTGAA GGTCGATGCC TATCCGGGCC GCGTGTTCGA CGGCAAGATC
ACCACGATCG AGCCGCAGAT CTCGTCCGAC ACCCGCAACA TCCGGGTGCA GGCGACACTC
GACAATCCGG GGCACGTGCT GCGGCCGGGC ATGTTCGCCA CCACCATCGT GGTGCTGCCG
GACAAGCCGG CGGTCGTCAC CGTGCCGGAG ACTGCGGTCG ACTACACGCT GTACGGAGAC
TCGGTCTTCC TGATCAAGGA AGAGAAGGGC GAGGACGGCA AGGCCAAGCT TTCGGCGGTG
CGGACCTTCG TGCGCACCGG TGACCGCATC GATGGCCGCA CCGTGATCCA GACCGGTTTG
AAAGCAGGTG ATCGCGTCGT CGCGGTCGGC CAGCTCAAGC TGCAGTCGGG TGCCGCGGTT
GCGATCTCGA CCGATCCGCC TCCGCCGCAG CCGAAGACGC CGCCGCGTTA CTAA
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| Protein sequence | MTLATETPPS ARSSSEKPRP RPVRTVRWFI IVGLLLALLV GGLVGFNAFR NHMIAQFFAN
NKPPPITVTV AEAKTEVLPN LLTAVGDLAA VHQVNVTSDV SGRITDILFQ AGSEVKQGTL
LVKLFDETEQ ADLANYRAQA KVAELSLDRA KQLAARQFGP QATVDSAQAA YDQANAGIAK
TEALISQKKV RAPFDGVLGV RHVEVGQYLS AGTQIVTLTD LSQVYANITV TEKDSGTLAV
GQAVRLKVDA YPGRVFDGKI TTIEPQISSD TRNIRVQATL DNPGHVLRPG MFATTIVVLP
DKPAVVTVPE TAVDYTLYGD SVFLIKEEKG EDGKAKLSAV RTFVRTGDRI DGRTVIQTGL
KAGDRVVAVG QLKLQSGAAV AISTDPPPPQ PKTPPRY
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