| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4263 |
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| Symbol | |
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| ID | 6411947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4584508 |
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| End bp | 4585347 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714145 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001993234 |
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| Protein GI | 192292629 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTTC ACGCCACGCC AGAGCCGGCC GCACATCAAG GTGTCGCGCT CGGCAGTTCG
TTCTACGCCG CGATGCGCAT CCTGCCGCGT CCGCAGCGCG AGGCGATGTT CCAGGTCTAC
AGCTTCTGCC GCTTCGTCGA CGACATCGCC GATTCCGATC GGCCGCGCGA GCAGCGGGTC
GCCGAGCTGC AGCAATGGCG CGACGACATC GCCGCGCTGT ATCGCGGTGC GCCGCCGCCG
CGGCTCGCCG ACTATCAGGA GTCGCTGCGC ACTTTCGGGC TGAAGCGCGA GGACTTCGAG
GCGATCATCG ACGGCATGGA GATGGATGTC GACGCCGACA TCCGCGCGCC CGATGAGGCC
ACGCTCGATC TGTACTGCGA CCGCGTCGCC AGCGCGGTGG GACGGCTGTC GGTGCGGATC
TTCGGCCTTC CGGAAGCCGA CGGCATCGAG CTGTCGCATC ATCTCGGACG CGCGCTGCAG
CTCACCAACA TCCTGCGCGA CATCGACGAG GACACCGGCA TCGGCCGGCT GTATCTGCCG
AGCGAGCTGC TGCACAAGGT CGGTATCACC GCAACCGATC CGCGCGTGGT CGCGGCGGAT
TCTGCGCTGC CGAGCGTCTG CGCGCCGCTG GTCGAGCGTG CGCTCGCGCA TTTTGCCGCC
GCCGACAAGG TGATGAACCG TAATCCGCGC CGGGTGGTGA AAGCTCCCCG TATCATGGGC
AAGTACTACT ACTCGATCTT GCAGCTTTTG ATCGCGCGCG GTTTCGCAGC GCCGCGCGCC
CCGGTGAAGC TCGGCAAGGC TTCGAAGATC GCCATCCTGC TGCAATACGC GATCGTGTGA
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| Protein sequence | MTVHATPEPA AHQGVALGSS FYAAMRILPR PQREAMFQVY SFCRFVDDIA DSDRPREQRV
AELQQWRDDI AALYRGAPPP RLADYQESLR TFGLKREDFE AIIDGMEMDV DADIRAPDEA
TLDLYCDRVA SAVGRLSVRI FGLPEADGIE LSHHLGRALQ LTNILRDIDE DTGIGRLYLP
SELLHKVGIT ATDPRVVAAD SALPSVCAPL VERALAHFAA ADKVMNRNPR RVVKAPRIMG
KYYYSILQLL IARGFAAPRA PVKLGKASKI AILLQYAIV
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