Gene Rpal_4249 details

Gene Information

• Locus tag: Rpal_4249
• ID: 6411933
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 4564119
• End bp: 4566131
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642714131
• Product: Carbohydrate-selective porin OprB
• Protein accession: YP_001993220
• Protein GI: 192292615
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGAAACA CTCTCTTTTT TCCGATCCTC GCTGCCGCCA CGATCTGCGC CGCGCCCGCC 
GGTGCGGCCG ATCTCGCGCG CAAGGCGCCG GAGGCGCCGC GCGCGGTGTT CGACTGGAGC 
GGGTTCTATA TCGGCGCGCA TTTCAGCGCG GTCGCAGGTC ACTCGAACTG GAGCTCCACC 
CCGGCCGGCG GCAGCGGCTC GATCGATCTG TTCGATGCGT TTCAGCTATT TAAAGGCACT 
GGCAGCTACG TGATCGGCCT CCAGGCCGGC TACAACTGGA TGCTGCCGTC GCGCTGGCTG 
ATCGGCATCG AGGCCGACCT CAATTCACCG AACACCCTCG GCGGCAACAC CGGCAACACG 
CTGCCGTCGG GCACGGTCGG CGGCCATGAT CATCAGGCGC TGCTCGGCGG CACCGTGCGC 
GGCCGGGTCG GCTACGCGTT CGACGGCTGG CTACCCTACG TCACCGCCGG CTTCGCCTGG 
AGCTACGACC GGCTGCGCTG GCCGCCGGAT CCCTCGCTCG CGCAGCAGGA GACCGCGCTG 
TTGTGGCGGC TCGGCTGGGC CGCCGGCGCT GGCGTCGACG TGCCGCTATC GCCGGCCTGG 
AGCGCGCGCG CCGAATATCT GGCGACCGGG TTCGGTTCCG GCACCGTCAG CTTTCCGATC 
GCCGGCCAGA GCGTGTCGTC CGACGTGCTG ACCCACGCGG TCCGGCTCGG CCTGAACTAT 
CGGCTCGGCG ACGACCTGAC CAAGTCCGAC GTGTTCACCA AGGGCATCGA CGCGCTGGAG 
CTGGAGCGCT TCGCGGTGCA CGGCCAGAGC ACCTTCACCT GGCAATACGC GCCCGGATTC 
CGCTCGCCGT ATAGCGGCGC CAACAGCCTC GCCCCGAACC AGGCGCGCGA GACCTTCGAC 
GCCACGCTCT ACATCGGCGC CAAGCTGTGG GACGGGGCCG AGTTCTGGGT CAATCCGGAG 
ATCAATCAGG GCTTCGGCCT CAGCGGCACC TTCGGCATCG CGTCGTTCCC GAGCGCGGAG 
TCCTACAAGG TCGGCGCCAA CTATCCGTAT GCGCGGGTGC CGCGCTATTT CGTCCGCCAG 
ACGCTCGATC TCGGCGGTGC GGTCGAAACC GTGCAGGGCG GGCCCAACCA GTTCGCCGGC 
AAGCAATCCG CCGAGCGCAT CGTCATCACC GCCGGCAAGT TCTCGGTCGG CGACATCTTC 
GACGTCAACA AATACGCCCA CGACCCGCGC GTCGACTTCC TCAACTGGGG CCTCGCCGAC 
GCGCTGACCT TCGACTACGC GGCCGACGCC TGGGCCTTCA CCTACGGCAC CGCGGTCGAG 
TGGTACACCG GCGCCTGGAC GGTGCGCGGC GGCGTGTTCG ATCTGCCGCA GACGCCGAAC 
AGCACTGATC TTGATTCCAG CTTCGGACAG TTCCAACTGG TTGGTGAACT CGAACACCGC 
CATGAACTGT GGGGCCTGGC CGGCAAGGTG CTGGTCACCG GCTTCCTGAA CCGCGCCCGA 
CTCGGCAATT TCACCGATGC GGTCCGCGCC GCGCAGGCGA CCGGCGCAAC GCCGAACATC 
GCCGACGTGC GGCGCTACAC CTCCAAGACC GGCCTGTCCG CCAGCCTGGA GCAGCAGCTC 
ACCGCCGACA TCGGCATGTT CGCGCGCGCC GGCTTCAGCA GCCCGAACCT CGAGACCAAC 
GCCTTCACCG ATTCCGACCG CACGGTGTCG GCGGGCCTGT CGCTGTCGGG ACGGATGTGG 
GGCCGCGCCG ACGACACCGT CGGCATCGGC GGCCTGCTCA ACCACATCTC GGCGTCGCGG 
ATCGCATATC TCGACGCCGG CGGCCTGACG GCGATCATCG GCGATGGCCG CCTGCCCAAC 
CCCGGCGACG AGAAGGTGTT CGAAGCCTAT TACAGCCTGC CGGTGTATTC GTGGCGGCTG 
ACCGCGGACT ACCAGTTCGT CGCCAACCCG GCCTTCAACC GCGACCGCGG CCCGGTCCAC 
CTGATCGCCA CGCGACTGCG CACGCAGTTC TGA 

 

Protein sequence

MRNTLFFPIL AAATICAAPA GAADLARKAP EAPRAVFDWS GFYIGAHFSA VAGHSNWSST 
PAGGSGSIDL FDAFQLFKGT GSYVIGLQAG YNWMLPSRWL IGIEADLNSP NTLGGNTGNT 
LPSGTVGGHD HQALLGGTVR GRVGYAFDGW LPYVTAGFAW SYDRLRWPPD PSLAQQETAL 
LWRLGWAAGA GVDVPLSPAW SARAEYLATG FGSGTVSFPI AGQSVSSDVL THAVRLGLNY 
RLGDDLTKSD VFTKGIDALE LERFAVHGQS TFTWQYAPGF RSPYSGANSL APNQARETFD 
ATLYIGAKLW DGAEFWVNPE INQGFGLSGT FGIASFPSAE SYKVGANYPY ARVPRYFVRQ 
TLDLGGAVET VQGGPNQFAG KQSAERIVIT AGKFSVGDIF DVNKYAHDPR VDFLNWGLAD 
ALTFDYAADA WAFTYGTAVE WYTGAWTVRG GVFDLPQTPN STDLDSSFGQ FQLVGELEHR 
HELWGLAGKV LVTGFLNRAR LGNFTDAVRA AQATGATPNI ADVRRYTSKT GLSASLEQQL 
TADIGMFARA GFSSPNLETN AFTDSDRTVS AGLSLSGRMW GRADDTVGIG GLLNHISASR 
IAYLDAGGLT AIIGDGRLPN PGDEKVFEAY YSLPVYSWRL TADYQFVANP AFNRDRGPVH 
LIATRLRTQF