| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4224 |
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| Symbol | metH |
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| ID | 6411908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 4530153 |
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| End bp | 4534034 |
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| Gene Length | 3882 bp |
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| Protein Length | 1293 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642714106 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_001993195 |
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| Protein GI | 192292590 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.572954 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGC CGATTTCCGC CAAGCGTACC CAACTGCTGG CCCTCGCCGC GCAACGTATC
CTCGTGCTCG ACGGCGCGAT GGGGACGATG ATCCAGCAGC TGCAGCTCGA CGAAGCTGCG
TTCCGCGGCG AGCGGTTCAA GGACTTCCAC CGCGACCTGC GCGGCAACAA CGACCTGTTG
ATCCTGACCC AGCCGCAGGC GATCGAGGAC ATCCACGCGC AGTACCTGCG CGCCGGCGCC
GACATCGTTG CGACCAACAC CTTCTCCTCG ACCTCGATCG CCCAGGCCGA CTACGACATG
TCGGAGCTGG CCTACGAGAT GAGCCGCGAC GGCGCCCGCC TCGCCCGCAA CGCCGCCGCC
AAGGTCGAAG CGGAGGACGG CAAGCCGCGC TTCGTCGCGG GCGCGATCGG CCCGACCAAC
CGCACCGCCT CGATCTCGCC GGACGTCGCC AATCCGGGCT ATCGCGCGGT GACGTTCGAC
GATCTGCGCA TCGCCTATAG CGAGCAGATC AACGGCCTGC TCGACGGCGG CGCCGACATC
CTGCTGCTCG AAACCATCTT CGACACGCTG AACGCCAAGG CGGCGCTGTA CGCGATCGCC
GAGATCACCG AAGCCCGCGG CATCGACGTG CCGGTGATGA TCTCCGGCAC CATCACCGAC
AAATCCGGCC GCCTGCTGTC GGGCCAGATG CCCGAAGCGT TCTGGAATTC GGTCCGGCAT
GCGCGGCCGA TCACCATCGG CTTCAACTGC GCGCTCGGCG CCAAGGATCT GCGCGCCCAC
ATCGCCGATA TCAGCCGCGT CGCCGATACG CTGGTCTGCG CCTATCCCAA CGCCGGCCTG
CCCAACGAAT TCGGCCAGTA CGACGAGAGC CCGGAATACA TGGCCTCGCT GGTCGGCGAA
TTCGCCGAAG CCGGCCTCGT CAACATCGTC GGCGGCTGCT GCGGCACCAC GCCAGCCCAC
ATCAAGGCGA TCGCCGAAGC GGTCGCGCCG CATAAGCCGC GCGTGATCCC GACGATCGAG
CCGCGGCTGC GGCTCTCGGG CCTCGAGCCG TTCGAGCTCA CCAAGGACAT TCCGTTCGTC
AATGTCGGCG AGCGCACCAA CGTCACCGGC TCGGCGAAAT TCCGCAAATT GATCACCGCC
GGCGACTACG CCGCCGCGCT GCAGGTGGCC CGTGATCAGG TCGATAACGG CGCCCAGATC
ATCGACGTCA ACATGGACGA AGGGCTTCTC GATTCCGAAG CCGCGATGGT CACCTTCCTC
AACCTCGTCG CCGCCGAACC GGACATCGCC AAGGTGCCGG TGATGGTCGA CTCGTCGAAG
TTCAATGTGA TCGAGGCCGG GCTGAAGTGC CTGCAAGGCA AGCCGGTGGT GAACTCGATC
TCGCTGAAGG AAGGCGAGGA CAAGTTCCTG CACGAAGCCA GGATCGCGCG CCGTCACGGC
GCCGCGGTCG TGGTGATGGC GTTCGACGAG ACCGGCCAGG CCGACACCTA CGCGCGCAAG
ACCGAGATCT GCGCCCGCGC TTACGACATC CTGGTGAACC GCGTCGGCTT CCCGCCGGAA
GACATCATCT TCGATCCGAA CATCTTCGCG ATCGCCACCG GCCTCGAAGA GCACAACAAT
TACGGCGTCG ACTTTATCGA GGCGACGCGC TGGATCCGTT CGAGCCTGCC GCACGCCCAC
ATCTCCGGCG GCGTGTCCAA TCTCTCCTTC TCGTTCCGCG GCAACGAGCC GGTGCGCGAG
GCGATGCACT CGGTGTTCCT GTATCACGCC ATCAAGGCCG GCATGGACAT GGGCATCGTC
AATGCCGGGC AGATGATCGT GTACGACGAC ATCGATCCCG AGCTGCGCCA GGTCTGCGAG
GACGTGATCC TCAACCGTGA TCCAGGCGCT TCCGAACGGC TGCTGGCGCT CGCCGACAAG
TATCGCGGCC AAGGCAAGCA GCAGAAGGAA CAGGACCTCG CCTGGCGCTC CTGGCCGGTC
GAGCAGCGGC TCAGCCACGC GCTGGTACAC GGCATCACCG AGTTCATCGA GCTTGATACC
GAAGAAGCGC GCGCCAAGGC CGAGCGGCCG CTGCACGTGA TCGAAGGTCC GCTGATGGCC
GGCATGAACG TGGTCGGCGA CCTGTTCGGC GACGGCAAGA TGTTCCTGCC GCAGGTGGTG
AAGTCGGCCC GCGTGATGAA GCAGGCAGTC GCCTATCTGA TGCCGTTCAT GGAAGAGGAG
AAGGCACGCA ATCTCGCCGC CGGCACCGAC ACCGGCGAAC GTGCCACCGC CGGTAAGATC
GTGCTCGCCA CCGTCAAGGG CGACGTCCAC GACATCGGCA AGAACATCGT CGGCATCGTG
CTCCAGTGCA ACAATTTCGA GGTGATCGAC CTCGGTGTGA TGGTGCCGGC CGCCAAGATC
ATCGAGACCG CGAAGGCCGA GAACGCCGAT ATCATCGGCC TGTCCGGTCT GATCACGCCG
TCGCTCGACG AGATGAGCTT CCTCGCCGGC GAGCTGCAGC GGAGCGGCTT CAATATTCCG
CTGCTGATCG GCGGCGCCAC CACCAGCCGC GTCCACACCG CGGTGAAGAT CGACCCGGCC
TATCCGTCGG GCAGCGTCGT CTACGTCAAC GACGCCAGCC GCGCGGTCGG CGTCGCCTCC
TCGCTGCTGT CGAAAGACAG AGGCGCCGCC TACGCGACGG AGGTGCGCGC CGACTACGCC
AAGATCTCGG CGGCACATCA CCGAGCCCAG GCCGACAAGA AGCGGCTGAC GCTTTCCGCG
GCCCGCGCCA ACTCCACCAA GATCGACTGG ACCGCGACCA GACCGGTGAA GCCGTCCTTC
ATCGGCACGC GGAGCTTCAG CGGCTATTCG CTGGCGGAGC TCGCCGAGTA CATCGACTGG
ACGCCGTTCT TCCAGGCCTG GGAGCTCGCC GGACGCTTCC CCGCGATCCT CGACGACAGC
GTGGTCGGCG AAGCGGCGCG GTCGCTGTAT GCCGACGCCC GCAAGATGCT GGACCGCATC
GTCACCGAGA ACTGGTTCAC CGCCAAGGCA ACCATCGGGT TCTGGCCGGC GAACGCGGAC
GGCGACGACA TCCTGGTCTA TGCGGACGAA ACCCGCACCA CGCCGATAGC GACGCTGCAC
ACGCTGCGCC AGCAACTCGA CAAGCGCGAG GGCCGCGCCA ACGCCGCGCT GAGCGACTTC
ATCGCGCCGG TCGCGAGCGG CGTCGCCGAC TATATCGGCG GTTTCGTCGT CACCGCCGGC
ATCGGCGAGG ACGTGATCGC CGACAAGTTC AAGGCCGAAC GCGACGACTA CTCGTCGATC
ATGGTCAAGG CGCTGGCGGA TCGTCTCGCC GAGGCCTTCG CCGAGCGGAT GCACGCCCGC
GTCCGCCGCG AATTCTGGGG CTATGCGGCG GACGAGAACC TCTCGGCCGA GGATCTGATC
CTGGAGAAGT ATCAGGGCAT CCGCCCAGCG CCCGGCTATC CGGCCCAGCC CGACCACACC
GAGAAGGCAA CGCTGTTCGA GCTGCTCGAC GCCGAAGCCT CCGCCAGCGT GACGCTGACC
GAGAGCTTCG CGATGTGGCC GGGCTCGTCG GTGTCGGGAC TGTATTTTAG CCATCCGCAG
AGCGCTTATT TCGGCGTCGG CAAGATCGAA CGCGATCAAG TCGAGGACTA CGCCGCCCGC
AAGGGCTGGG ACGTCGCCAC CGCCGAGCGC TGGCTGGCAC CGGTGCTGAA CTACATTCCG
TCGCGCAGCA CGGGCGCCAC CGACGAAACC GGCATGCCGC CGCTGGCGCC GCAAGCCGCT
GCCCCGCTCT CTGCCGAAGA CGCCGCTCTG GCCTCGCACC CGCAGGGCTG CACCTGCGCG
CTGCACCTCG CCTGGCGCAA GCAGAAGGTC GCGGCGAAGT AA
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| Protein sequence | MTKPISAKRT QLLALAAQRI LVLDGAMGTM IQQLQLDEAA FRGERFKDFH RDLRGNNDLL
ILTQPQAIED IHAQYLRAGA DIVATNTFSS TSIAQADYDM SELAYEMSRD GARLARNAAA
KVEAEDGKPR FVAGAIGPTN RTASISPDVA NPGYRAVTFD DLRIAYSEQI NGLLDGGADI
LLLETIFDTL NAKAALYAIA EITEARGIDV PVMISGTITD KSGRLLSGQM PEAFWNSVRH
ARPITIGFNC ALGAKDLRAH IADISRVADT LVCAYPNAGL PNEFGQYDES PEYMASLVGE
FAEAGLVNIV GGCCGTTPAH IKAIAEAVAP HKPRVIPTIE PRLRLSGLEP FELTKDIPFV
NVGERTNVTG SAKFRKLITA GDYAAALQVA RDQVDNGAQI IDVNMDEGLL DSEAAMVTFL
NLVAAEPDIA KVPVMVDSSK FNVIEAGLKC LQGKPVVNSI SLKEGEDKFL HEARIARRHG
AAVVVMAFDE TGQADTYARK TEICARAYDI LVNRVGFPPE DIIFDPNIFA IATGLEEHNN
YGVDFIEATR WIRSSLPHAH ISGGVSNLSF SFRGNEPVRE AMHSVFLYHA IKAGMDMGIV
NAGQMIVYDD IDPELRQVCE DVILNRDPGA SERLLALADK YRGQGKQQKE QDLAWRSWPV
EQRLSHALVH GITEFIELDT EEARAKAERP LHVIEGPLMA GMNVVGDLFG DGKMFLPQVV
KSARVMKQAV AYLMPFMEEE KARNLAAGTD TGERATAGKI VLATVKGDVH DIGKNIVGIV
LQCNNFEVID LGVMVPAAKI IETAKAENAD IIGLSGLITP SLDEMSFLAG ELQRSGFNIP
LLIGGATTSR VHTAVKIDPA YPSGSVVYVN DASRAVGVAS SLLSKDRGAA YATEVRADYA
KISAAHHRAQ ADKKRLTLSA ARANSTKIDW TATRPVKPSF IGTRSFSGYS LAELAEYIDW
TPFFQAWELA GRFPAILDDS VVGEAARSLY ADARKMLDRI VTENWFTAKA TIGFWPANAD
GDDILVYADE TRTTPIATLH TLRQQLDKRE GRANAALSDF IAPVASGVAD YIGGFVVTAG
IGEDVIADKF KAERDDYSSI MVKALADRLA EAFAERMHAR VRREFWGYAA DENLSAEDLI
LEKYQGIRPA PGYPAQPDHT EKATLFELLD AEASASVTLT ESFAMWPGSS VSGLYFSHPQ
SAYFGVGKIE RDQVEDYAAR KGWDVATAER WLAPVLNYIP SRSTGATDET GMPPLAPQAA
APLSAEDAAL ASHPQGCTCA LHLAWRKQKV AAK
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