Gene Rpal_4152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4152 
Symbol 
ID6411836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4444866 
End bp4445639 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content68% 
IMG OID642714034 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001993123 
Protein GI192292518 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACTGA GCGGCAAGAC GGCATTGATC ACCGGCGGCA ACAGCGGCAT CGGTCTTGCG 
ACCGCCAAGC TGTTCGTGAC CGAAGGCGCA CGCGTGACGA TCACCGGCCG TGATCGGGCG
AGACTGGATG CGGCCGCGCG CGAGCTCGGC GCGCAGGCGC TCGCGGTCGA GGCCGATGTC
ACCGACATCG CAGCGATCGA GAACGCGGTC GCCCGTGCGG CGGAGCGGTT CGGCAAGCTC
GACATCGTGT TCGCCAATGC GGGCATCCCC GGCGCGACGC CGCTCGGCGG CACTTCGCTG
GCGGCGTTCG AACAGGTGAT CCGCACCAAT CTGACGGCGG TGTTCTTCAC CGTGCAGGCT
GCGTTGCCGT ATCTGAACGA CGGCGCCTCG ATCATTCTCA ACGGTTCGGT GATCTCGGTG
CTCGGCAATC CGGGCTTTGC GGCCTACGCG GCGAGCAAGG CCGGGCTGCG CGGAATGGCG
CGGGTGATGG CTTCCGAACT GTCGCCGCGC AACATCCGCG TCAATGTGGT GGCGCCGGGC
GGGGCACGGA CACCGATCTG GAAGGACACC GCGCCGACCG ATCAGGCGAT GGCCGTGCTC
GAAAAGCGGA TCGCGGCGGC GACGCCGCTC GGCCGGATCG CCGAGCCGGA GCACATCGCC
AAGACCGTGC TGTTTCTCGC CTCCGACGAT GCCGCCCACA TCCAGAGCGC CGAAATCTTC
GTCGATGGCG GCGCCACCGG ATCGCCCGCG GGTGTGCCGG CGTTTCGCAG CTGA
 
Protein sequence
MRLSGKTALI TGGNSGIGLA TAKLFVTEGA RVTITGRDRA RLDAAARELG AQALAVEADV 
TDIAAIENAV ARAAERFGKL DIVFANAGIP GATPLGGTSL AAFEQVIRTN LTAVFFTVQA
ALPYLNDGAS IILNGSVISV LGNPGFAAYA ASKAGLRGMA RVMASELSPR NIRVNVVAPG
GARTPIWKDT APTDQAMAVL EKRIAAATPL GRIAEPEHIA KTVLFLASDD AAHIQSAEIF
VDGGATGSPA GVPAFRS