| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4060 |
|---|
| Symbol | |
|---|
| ID | 6411744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4357808 |
|---|
| End bp | 4359400 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642713942 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_001993031 |
|---|
| Protein GI | 192292426 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.236372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCGA CAACCACGGC AGACACACCG ATCGCGGCGC CCGCCGAACC GTCCGAACAC
GTCCCGGCGA CACGCCTGAT CGCGTTTCTG ATCATGGTGT TCGGGATGTT CATGTCGATC
CTGGATATCC AGATCGTCTC GGCATCGCTA TCCGAAATTC AGGCCGGTCT GTCGGCGTCA
TCGTCCGAAG TCTCGTGGGT GCAGACCGCG TATCTGATCG CCGAAGTGAT CGCGATCCCG
CTGTCCGGCT TCCTGTCGCG CGCGCTCGGC ACGCGAAATC TGTTCGCGAT CTCGGCGGCC
GGCTTCACCT TTGCCAGCCT GATGTGCGGC TTCACCTCGT CGATCGCCGA GATGATCGTG
TGGCGCGCGA TCCAGGGCTT TCTCGGCGCC GGCATGATCC CGACCGTGTT CGCCTCGGCC
TACACGGTGT TTCCGCGCAG CAAGTTCAAC ATGGTCGGCC CGATCATTGG TCTCGTCGCC
ACCCTGGCGC CGACCATCGG GCCCACGGTC GGCGGCTACA TCACCGACCT GATGTCGTGG
CACTGGCTGT TCTTCATCAA CATCGTGCCC GGCATCGGCA TCACCATCGG CGTGCTGGCG
CTGGTCGATT TCGACGAGCC GCATTACGAG CTGCTCGATC ATTTCGACTG GTGGGGCCTC
GGCTTCATGG CCGGCTTTCT CGGCTCGCTC GAATACGTGC TGGAAGAGGG CCCGCGCAAC
GACTGGTTCA ACGACGAGTC GATCTTCATT TTCGCGATCG TCTGCGTGGT GTCGGCGGTG
GCGTTCTTCT GGCGGGTGCT CACCGCGCGG GAGCCGATCG TCGACATCCG CGCCTTCACC
GACCGCAATT TCGCGATCGG CTGCATGTTC CAGTTCTGCG TCGGCATCGG GCTGTACGGC
CTGACCTACA TCTATCCGCG CTATCTCGCC GAAGTGCGCG GCTACAGCGC GCTGATGATC
GGGGAGACGA TGTTCGTCTC TGGCATCGCG ATGTTCCTGT CGGCGCCGCT GGTCGGCCGG
CTGATGGCGC TGGTCGACAT GCGGATCCTG ATCGCGGTCG GCCTGCTCCT GTTCGCCGGC
GGCACCTGGC AGATGACCTG GATCACCCGC GACTTCGATT TCTACGAGCT GTTATGGCCG
CAGATCTTCC GCGGCGTCGG CATGATGATG GCGATGGTGC CGGTCAACAA CATCGCGCTC
GGAACGCTGC CGCCGCACCG GGTCAAGAAC GCCTCCGGCC TGTTCAACCT GACCCGCAAT
CTCGGCGGCG CGCTCGGGCT GGCGCTGATC AACACCATCC TCGACGGCCG CACCGACCTG
CACATCTCGC GGCTGCACGA CAAGGTGAAC TGGGGCAACG CCCAGGCGGT CGAGCTGCTC
AACACCTTCA CCCAGCGCTT CCAGGGCATG GGCGATGCCT CGATGATGGC GCTGAAACAG
CTCACCGCGA TCGTCCATCG CCAGGCCGTG GTGATGAGCT ACGGCGACGC CTTCTTCCTG
CTGACGGTGT TCTACCTCGG ACTCAGCACG CTGGTGTTCC TGCTCGCCAA GCCGGCCAAC
CCGATGGCCG CGGCGGGCGG TGGGGGGCAT TGA
|
|---|
| Protein sequence | MSATTTADTP IAAPAEPSEH VPATRLIAFL IMVFGMFMSI LDIQIVSASL SEIQAGLSAS
SSEVSWVQTA YLIAEVIAIP LSGFLSRALG TRNLFAISAA GFTFASLMCG FTSSIAEMIV
WRAIQGFLGA GMIPTVFASA YTVFPRSKFN MVGPIIGLVA TLAPTIGPTV GGYITDLMSW
HWLFFINIVP GIGITIGVLA LVDFDEPHYE LLDHFDWWGL GFMAGFLGSL EYVLEEGPRN
DWFNDESIFI FAIVCVVSAV AFFWRVLTAR EPIVDIRAFT DRNFAIGCMF QFCVGIGLYG
LTYIYPRYLA EVRGYSALMI GETMFVSGIA MFLSAPLVGR LMALVDMRIL IAVGLLLFAG
GTWQMTWITR DFDFYELLWP QIFRGVGMMM AMVPVNNIAL GTLPPHRVKN ASGLFNLTRN
LGGALGLALI NTILDGRTDL HISRLHDKVN WGNAQAVELL NTFTQRFQGM GDASMMALKQ
LTAIVHRQAV VMSYGDAFFL LTVFYLGLST LVFLLAKPAN PMAAAGGGGH
|
|---|
| |