Gene Rpal_4039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_4039 
SymbollpxC 
ID6411722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp4331934 
End bp4332896 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content67% 
IMG OID642713921 
ProductUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 
Protein accessionYP_001993010 
Protein GI192292405 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase 
TIGRFAM ID[TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.685432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTCA GCCGGCAAAC CACGCTGCGT TCGCAAGCCA CGGTGACGGG CGTAGGTGTT 
CATTCGGGCC GTCCTGTGAA TCTGACGCTG GGACCCGCAG ATATCGATGC GGGTTTTCTT 
TTTGTCCGGA CCGGACTTGA TGGCGCCGAT CGCGAGATCA AGGCGACGTC CAAGTCGGTG 
GTCGCCACCG AGCTGGCCAC CGTCCTCGGC GACAGCGACG GTCCGCTGGT CTCCACCGCC 
GAACACGTTC TCTCCGCGCT GCGCGGCATG GGCATCGACA ACGCCACGAT CGAAGTCGAC 
GGCCCCGAAG TCCCGATCAT GGACGGCAGC GCCGCCCCGT TCGTCGCCGC CATCGACCAG 
GCCGGCCTTC GCGAGCAGGC TGCCCCCCGC AAATACCTCC AGATTCTGAA GCCGGTCTCC 
GCCGCGATCG GCGAATCCTT CGGCGAATTC CGGCCCTACG CCGCCGGCTT CCGCGTCGAA 
GTCGAAATCG ACTTTTCCAA TCCGCAGATC GGCAAGCAGA AATATGCGCT CGCGGTCGAG 
CCGGAGATCT TCCGCCGCGA AGTCGCGCGC GCCCGCACCT TCGGCCGCAT GAATGACGTC 
GCCCGGCTGT GGAAGATGGG CTACGCGCTC GGCGCCTCGT TCGAAAACTC GGTGGTGTTC 
GACGACGACC GTCTGCTCAA CCCCGAAGGC CTGCGCTACT CCGACGAATG CGCCCGCCAC 
AAGGCGCTGG ACGCTATCGG AGACCTGGCG CTCGCCGGCC TGCCGATCCT CGGCGCCTAC 
CGCTCGGTGC GCGGCGGCCA CAAGCTCAAC CACACCGTGC TCACCGCTCT GTTGGCTGAT 
CGCAGCGCTT GGCGCGTGAT CGAAGCCGAG CCGGCGCGTC GCGCCGTTCG CGGCCACGCC 
GAAGCCGTCA CCGGACTGGT CGGCGGCATG GTGGCTCCGG CCTACGGCCC GGACGTGTCC 
TGA
 
Protein sequence
MKFSRQTTLR SQATVTGVGV HSGRPVNLTL GPADIDAGFL FVRTGLDGAD REIKATSKSV 
VATELATVLG DSDGPLVSTA EHVLSALRGM GIDNATIEVD GPEVPIMDGS AAPFVAAIDQ 
AGLREQAAPR KYLQILKPVS AAIGESFGEF RPYAAGFRVE VEIDFSNPQI GKQKYALAVE 
PEIFRREVAR ARTFGRMNDV ARLWKMGYAL GASFENSVVF DDDRLLNPEG LRYSDECARH 
KALDAIGDLA LAGLPILGAY RSVRGGHKLN HTVLTALLAD RSAWRVIEAE PARRAVRGHA 
EAVTGLVGGM VAPAYGPDVS