| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4035 |
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| Symbol | |
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| ID | 6411718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4326362 |
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| End bp | 4328509 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713917 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001993006 |
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| Protein GI | 192292401 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.519531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCAA AGACCAAACC CGCCCCCGAT ATCGCCACCC TCACCAAGCC GAAGGCCAAG
GTGGAGCTGA TGCGATTGCG CCTTGAGATC GAGGGGCATG ACAAGGCCTA CTATCAGGAT
GACGCGCCGA AGATTTCGGA TGCCGACTAC GACGCGTTGC GGCGGCGGCT GGAGGCGATC
GAGCAGAAAT TTCCCGAGTT GGTCAACGCC TCGTCGCCGA CCCAGACCGT CGGCGCGGCG
CCGGCGCGCG GCTTTGCCAA AGTGCAGCAC GCGGTGCCGA TGCTGTCGCT CGGCAACGCA
TTTGCCGATG ACGAAGTCGC TGAATTCGTC GAGCGCGTGC AGCGTTTCCT GCGGCTCGAC
GACGTCCCGG CGATCGTTGC CGAACCGAAG ATCGACGGGC TGTCGCTGTC GCTGCGCTAT
GAGAATGGCG AGCTGGTGCG CGCGGCGACC CGCGGCGATG GCTTCACCGG CGAGGACGTC
ACCGCCAACG TCCGCACCAT CAAGGATGTG CCGAACACGC TGAAGGGCAA GCACATCCCG
GCCGCCTGCG AGCTGCGCGG GGAAGTCTAT ATGCTGAAGC AGGACTTCCT CGCGCTCAAC
AAACGCCAGG AGGAGGCGGG CGAGACCGTA TTTGCCAATC CGCGCAACTC GGCGGCCGGC
TCGCTGCGGC AGAAAGACGT GTTGGTCACC GCGTCGCGGC CGCTGAAGTT CTTCGCCTAT
GCGTGGGGCG AGATGAGCAC CTATCCGATG GACGAGCCGA CCCAGCACAA GATGCTGCAG
TGGCTCGATC ACGCCGGCTT CGTGGTCAAT CCCGAGATCA CGCTCTGCCA CAGCGTCGAG
GATGCGCTCG CGTTCTATCG CCGGATCGGC GAGAAGCGCG CGTCGCTGCC GTACGACATC
GACGGCGTGG TCTATAAGGT CGACCGGCTC GACTATCAGG AGCGGCTCGG CTTCGTGTCG
CGCTCGCCGC GCTGGGCGAT CGCGCATAAG TTCGCCGCCG AGCAGGCGAC GACCGTGCTG
GAGAAGATCG ACATCCAGGT CGGCCGGACC GGCGCGCTCA CTCCGGTGGC GCGGCTGCAG
CCGGTGACGG TCGGCGGCGT GGTGGTGCAG AACGCGACGT TGCACAATGA GGACTACATC
AGGGGCATCG GCAATGACGG CGAGCCGATC CGCGACGGCG TCGACATCCG CGAAGGCGAC
ACCGTGGTGG TGCAGCGCGC CGGCGACGTG ATCCCGCAGA TCGTCAGCGT GGTGATGCAG
AAGCGGCCCG CCGGTGCCGA GCCCTATCAC TTCCCGCACA AATGCCCGGT GTGCGGCAGC
CACGCGGTGC GCGAAGAGGG TGAGGCGGTG TGGCGCTGCA CCGGCGCGTT GATCTGCCCG
GCGCAGGCGG TTGAGCGGCT CAAGCACTTC GTGTCGCGGC TGGCCTTCGA TATCGATGGG
CTCGGCGAAA AACAGATCGA GCTGTTCCAC GAGCGCGGCT GGGTGCAGGA GCCCGCCGAT
ATCTTCACGC TGAAGGCGCG CAACGATCAG CTCAAGCTCG AACAGCTCGA AGGCTACGGC
GAGACCTCGG TGCGCAACCT GTTCGCGGCG ATCGACGCGC GGCGCACGAT CGAGCTGCAC
CGGCTGATCT TCGCGCTTGG CATCCGCCAT GTCGGCGAGG GCAACGCTAA GCTGCTGGCG
CGCCACTACG GCACGCTGGA TGCGTTCCTC AGCGCGATGC GCGCCGCTGC CGACGCGCAG
ACCGAGGAAG GCAACACCTC CGAGGCGTAT CAGGACCTCG ACAACATCGC TGGCATCGGC
GACGTCGTGG CAGAGGCGGT GGTCGAGTTC TTCGCCGAGG AGCGCAACAT CAAGGCGCTC
GATGCGTTGC TGGCCGAACT CACCGAAGTG CTGCCGGCCG AGCAGGCGCG GCGTGACACT
GCGGTCGCCG GCAAGACCGT GGTGTTCACC GGCTCGCTGT CGAAATTCAC CCGCGACGAA
GCCAAGGCCG CGGCGGAGCG GCTGGGCGCC AAGGTCGCCG GCTCGGTGTC GAAGAAGACC
GACTACGTCG TCGCCGGCGA AGACGCCGGC TCCAAGCTGA CCAAGGCGAA AGACCTCGGC
GTCACCGTGC TGACCGAAGA CGAGTGGCTG GCGCTGATCG GAAACTGA
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| Protein sequence | MTAKTKPAPD IATLTKPKAK VELMRLRLEI EGHDKAYYQD DAPKISDADY DALRRRLEAI
EQKFPELVNA SSPTQTVGAA PARGFAKVQH AVPMLSLGNA FADDEVAEFV ERVQRFLRLD
DVPAIVAEPK IDGLSLSLRY ENGELVRAAT RGDGFTGEDV TANVRTIKDV PNTLKGKHIP
AACELRGEVY MLKQDFLALN KRQEEAGETV FANPRNSAAG SLRQKDVLVT ASRPLKFFAY
AWGEMSTYPM DEPTQHKMLQ WLDHAGFVVN PEITLCHSVE DALAFYRRIG EKRASLPYDI
DGVVYKVDRL DYQERLGFVS RSPRWAIAHK FAAEQATTVL EKIDIQVGRT GALTPVARLQ
PVTVGGVVVQ NATLHNEDYI RGIGNDGEPI RDGVDIREGD TVVVQRAGDV IPQIVSVVMQ
KRPAGAEPYH FPHKCPVCGS HAVREEGEAV WRCTGALICP AQAVERLKHF VSRLAFDIDG
LGEKQIELFH ERGWVQEPAD IFTLKARNDQ LKLEQLEGYG ETSVRNLFAA IDARRTIELH
RLIFALGIRH VGEGNAKLLA RHYGTLDAFL SAMRAAADAQ TEEGNTSEAY QDLDNIAGIG
DVVAEAVVEF FAEERNIKAL DALLAELTEV LPAEQARRDT AVAGKTVVFT GSLSKFTRDE
AKAAAERLGA KVAGSVSKKT DYVVAGEDAG SKLTKAKDLG VTVLTEDEWL ALIGN
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