| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4002 |
|---|
| Symbol | |
|---|
| ID | 6411684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 4288937 |
|---|
| End bp | 4290442 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713884 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_001992973 |
|---|
| Protein GI | 192292368 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTG CGATCGCCTT TAGTTCCCGG ATCAGGCCCT TGCGGATCAG GCCGCTGCTC
GCCGCGCTGT GCCTCGGCGC GGCTGTGATC GCCGGCCCGG CGCCGGCCTC CGCCCGCGGC
CCCGAAGGGA TCGCCGACGT CGCCGAGAAG GTGATCGATG CGGTGGTCAA CATCTCCACC
ACCCAGACGG TCGACGCCAA GGGCTCGGGC GAGAGCAAGG GCGGCGCCGC GCCGCAACTG
CCGCCGGGCT CGCCGTTCGA GGAGTTCTTC GAGGACTTCT TCAAGAACCG CCGCGGCGAA
AAGGGCGGCG GTCCGCGGAA GACCAATTCG CTCGGCTCCG GCTTCATCAT TGATCCGGCC
GGCGTGGTCG TGACCAACAA TCACGTCATC GCCGATTCCG ACGAGATCAA CGTGATCCTC
AACGACGGCG CCAAGATCAA GGCGGAGCTG GTCGGCGTCG ACAAGAAGAC CGATCTTGCG
GTGCTGAAGT TCAAGCCGCC GGCGGGCAAG ACGCTGACCG CGGTGAAGTT CGGCGACAGC
GACAAGCTGC GGCTGGGCGA ATGGGTGATC GCGATCGGCA ATCCGTTCTC GCTCGGCGGC
ACCGTGACCG CCGGCATCGT CTCGGCGCGC AACCGCGACA TCAACTCCGG CCCTTATGAC
AGCTACATCC AGACCGACGC CGCGATCAAT CGCGGCAACT CCGGCGGTCC GCTGTTCAAC
CTCGCCGGCG AAGTGATCGG CGTGAACACT CTGATCATCT CGCCGTCGGG CGGCTCGATC
GGCATTGGCT TCGCGGTGCC GTCCAAGACC GTGGTGCCGG TGGTCGATCA GCTGCGTCAG
TTCGGCGAAC TGCGCCGCGG CTGGCTCGGC GTCCGCATCC AGCAGGTCAC CGACGAAATC
GCCGAGAGCC TGAGCATCAA GCCGGCGCGC GGCGCACTGG TCGCCGGCGT CGACGACAAG
GGCCCGGCCA AGCCGGCCGG CATCGAGCCC GGCGACGTGG TGGTGAAGTT CGACGGCAAG
GACATCAAGG AGCCGAAGGA CCTGTCGCGC ATCGTTGCCG ACACCGCGGT CGGCAAGACC
GTCGATGTCG TGGTGATCCG CAAGGGCAAG GAAGAAACCA AGCAGGTCAC GCTCGGCCGG
CTCGACGACG ATGCCAAGCC GCAACCGGCT TCGGCGAAGT CGCAGCCCGA GGCGGACAAG
CCGGTGACCC AGAAGGTGCT CGGTCTCGAT CTCGCCGCGC TGTCGAAGGA TTTGCGCGGC
CGCTACAAGA TCAAGGACAG CGTCAAGGGC GTGCTGGTGA CCGGTGTCGA CGACGGCTCC
GACGCGGCCG AGAAGCGGCT GTCGGCCGGC GACGTCATCG TCGAGGTGGC GCAGGAGTCG
GTCGGCAGCG CCGCCGACAT CAAGAAGCGT GTCGATCAGC TCAAGAAGGA CGGCAAGAAG
TCTGTGCTGC TGCTGGTCGC CAACGCTTCC GGCGAGCTGC GCTTCGTCGC GCTCAGCCTA
CAATAG
|
|---|
| Protein sequence | MPAAIAFSSR IRPLRIRPLL AALCLGAAVI AGPAPASARG PEGIADVAEK VIDAVVNIST
TQTVDAKGSG ESKGGAAPQL PPGSPFEEFF EDFFKNRRGE KGGGPRKTNS LGSGFIIDPA
GVVVTNNHVI ADSDEINVIL NDGAKIKAEL VGVDKKTDLA VLKFKPPAGK TLTAVKFGDS
DKLRLGEWVI AIGNPFSLGG TVTAGIVSAR NRDINSGPYD SYIQTDAAIN RGNSGGPLFN
LAGEVIGVNT LIISPSGGSI GIGFAVPSKT VVPVVDQLRQ FGELRRGWLG VRIQQVTDEI
AESLSIKPAR GALVAGVDDK GPAKPAGIEP GDVVVKFDGK DIKEPKDLSR IVADTAVGKT
VDVVVIRKGK EETKQVTLGR LDDDAKPQPA SAKSQPEADK PVTQKVLGLD LAALSKDLRG
RYKIKDSVKG VLVTGVDDGS DAAEKRLSAG DVIVEVAQES VGSAADIKKR VDQLKKDGKK
SVLLLVANAS GELRFVALSL Q
|
|---|
| |