| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_4000 |
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| Symbol | |
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| ID | 6411682 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4286872 |
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| End bp | 4288083 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642713882 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_001992971 |
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| Protein GI | 192292366 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTGT TTCGGCATAC AACGATCGTC GCCGCGGCTG CGCTGCTTGC AGTGCTCAGC
GCCGGCCCAG CGCTCGCCGG CGGCAGCTAT GACCCCGGCG CCAGCGACAG CCTGATCAAG
CTCGGCCAGA CCATGCCGTA TTCGGGACCG GCGTCGGCCT ATTCGACGAT TGGGCGCGCC
GAGGCCGCTT ACTTCAAGAT GCTGAACGAC AAGGGCGGCA TCAACGGCCG CAAGGTCGAG
TTGCTGAGCC TCGACGATGC CTACTCGCCG TCGAAGACGG TGGAGCAGGT CCGCCGGCTG
GTCGAAAGCG ACGAAGTGCT GGCGATGTTC TCGATCCTCG GCACCGGGCC GAACATCGCG
GTGCAGAAGT ATCTCAATAT CAAGAAGGTC CCGCAGCTAT TGCCGTTCAG CGGCGCCACG
CGCTGGAACG ACGCCAAGCA CTTCCCGTGG ACCACCGGCT CGCAGCCGAC CTACAAGACC
GAGGGCAGGA TCTACGCGAA GTGGATTCTC GCCAACAAGC CGAATGCTAA AATTGCGGTG
ATCACGCCGG CCGAAGAAGC CGGCCGCGAT TATCTCGCCG GCTTCAAGGA AGGACTCGGC
GACCATGTGA ACCAGATCGT GTCTGAGGCG GTGTATGAAA CCACCGATCC GACCGTCGAC
TCCCAGATCG TCAAGTTCAA GGCCGCCGGC GCCGACGTGC TGTTCAACGA ATGCACGCCG
AAATTCGCCG CGCAGGTGAT CAAGAAGGCC GCCGAGCTCG GCTGGAAGCC GCAGATCATT
CTGCCCGCGG TTTCGAATTC GGTCGGCTCG GTACTCAAGC CGGCGGGGCT GGAGAATGCG
GTCGGCATCG TCACCGGCGC TTACGTGAAG GATCCGGGCG ATCCGCGCTG GGCCAATGAT
CCCGGCATGC AGCAATGGCA CGCCTGGATG AAGACCTACA ATGCGGGTGC CGATCCGGCC
GATATCTTCA ACGTCTACGG TTACACGATC ACGCAGATCA TGGAGCTGGT GCTGCGTCGC
GCCGGCGACG ATCTCACCAG GGCAAATCTG ATGAAGCAGA TCGAGTCGCT CGATGGCGTC
GAGCTGCCGA TGCTGCTGCC TGGCATCAAG CTGCAGATGT CGCCCGACCA GCGCACGCCG
ATCCGGCAGT TGCAGATGGC GCGCTTCAAC GGCACCTCCT GGGAGCTGTT CGGCGACGTA
CTGAGCGAGT AG
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| Protein sequence | MQLFRHTTIV AAAALLAVLS AGPALAGGSY DPGASDSLIK LGQTMPYSGP ASAYSTIGRA
EAAYFKMLND KGGINGRKVE LLSLDDAYSP SKTVEQVRRL VESDEVLAMF SILGTGPNIA
VQKYLNIKKV PQLLPFSGAT RWNDAKHFPW TTGSQPTYKT EGRIYAKWIL ANKPNAKIAV
ITPAEEAGRD YLAGFKEGLG DHVNQIVSEA VYETTDPTVD SQIVKFKAAG ADVLFNECTP
KFAAQVIKKA AELGWKPQII LPAVSNSVGS VLKPAGLENA VGIVTGAYVK DPGDPRWAND
PGMQQWHAWM KTYNAGADPA DIFNVYGYTI TQIMELVLRR AGDDLTRANL MKQIESLDGV
ELPMLLPGIK LQMSPDQRTP IRQLQMARFN GTSWELFGDV LSE
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