Gene Rpal_3942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3942 
Symbol 
ID6411623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4229388 
End bp4229963 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content70% 
IMG OID642713823 
Productthioesterase superfamily protein 
Protein accessionYP_001992913 
Protein GI192292308 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATGC TCGATGCCGC TGCGCCGCCC GATCTCGCTG GCTTGTTCGC GCCCGCGCAG 
CGCCGCAGCC GCACCGTCGA CTGGCAGGAA CCGGGGCCGG TCGCCCGCGC CGCGATGGCG
ATGTCCGGCC TGGAGGTGAT GCAGGCGATC CGCGATGGCC GGCTGCCGCC GCCGCCGCTC
GCGCGACTGA TCGGCTTCAA GATGGCCGAA GTGCATCGCG GCCGGATTGT GATGCAGCTT
GATCCCGACC AGAGCCTGGA GAACACCGCG GGCCTGCTCC ACGGCGCGAT CGCAGCCGCG
CTGCTCGACA CCGCAATGGG CTGCGCGATC TCGACGCAGC AGCAGGCCGG GCAGGGCTCG
GTGACGATGG ATCTGAAGCT CAGCTATCTG CGGCCGCTGT CGGTGCGGTC CGGCACGATC
GTAGCCGAGG GGCGGGTGGT GAAGCTCGGG CGGCAGTCGA GCTACACCGA GGGCTTCGTC
TATGACGGCG CCGGCAAGCT GGCGGTGCAC GCCACTGCAA CTTTCGCGAT GCTCGGCGCC
GGGCCTGCTG CGGCGCCACA TCCGCACGAA TCCTGA
 
Protein sequence
MTMLDAAAPP DLAGLFAPAQ RRSRTVDWQE PGPVARAAMA MSGLEVMQAI RDGRLPPPPL 
ARLIGFKMAE VHRGRIVMQL DPDQSLENTA GLLHGAIAAA LLDTAMGCAI STQQQAGQGS
VTMDLKLSYL RPLSVRSGTI VAEGRVVKLG RQSSYTEGFV YDGAGKLAVH ATATFAMLGA
GPAAAPHPHE S