| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3895 |
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| Symbol | |
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| ID | 6411575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4181582 |
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| End bp | 4183843 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713777 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001992868 |
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| Protein GI | 192292263 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.495237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAGCG AGAACAAGAT TGTCGTCGGC GTCGCGATTG CGCTGTCGCT GAGTGGCGGC
CCCGAAGCGC TGGCGCAGAG CGCGAGCGAA CCGTCAGTGG CGCTGCCGCC GGTCACCGTG
CAGCCCGCCG AGCGGCGCGC AGTGCGCCGT GCGCAGCCGG CTCCCGCAGC TCAGCGCGCC
GCGCCGGCAC GGACCCCGGT GCGCGAACAG GCGACGCCAC CGGCGCGCCC GGTCAACGCC
AGCAACACCT CGGATCGCTA CGTCGCCCGC ACGTCCGCAA CGGCGACCAA GACCGACACC
CGGGTGCTGG AGACGCCGCA GTCGATCTCG ACCGTCACCC GCCGCCAGAT GGACGACCAG
AACGTTCAGA CCGTTGCCAA TGCGCTGCGC TATAGCGCGG GCGTGCTGTC GGATGCCGAC
ACCAATTCGC GCTTCGACAG CGTCTTCATC CGCGGCTTCG GCGCGTTCGG CACCGCGACT
AACTACGTCA GCTTCCTCGA CGGCTTGAAG CTGCCGCGCG GCCAGGCCTT CGCCAACACT
GCGATCGATC CGTTTCTGCT CGACCGCGTC GAGGTGCTGA AGGGACCTTC GGCAGTGCTG
TACGGGCAGA CCAGCCCGGG CGGCCTGGTC AATCAGATCA GCCGGATGCC GAGCGCAGTG
CCCTACAATG AAGTTCGCGT CGAAGGCGGC AGCTATGGCC GCTTTCAGTC CGGCGTCACC
AGCCAGGGCG CGCTCGATAA GGACGGCCAT TGGCTGTACA GTCTGAGTGC GATCGGCCGC
ACCTCCGGCA CGCGCTACGA CAATGTCGAC GAGCAGCGCT TCGCCGTCGC GCCGGCTTTG
ACCTGGGCGC CGGATGCAGA CACGCGCTTC ACCGTTCAGA GCTACTACCA AAAGGACCCG
AAGGGCGGCT ATTTCAACTC GCTGTATCCG ACCTCGCTGG CGCCGCTGCA GTACCGGCCG
TACCTGAACT CCAAGCTCAA TGTCGGCGAT CCCGGCTTCG ACTCGTTCGA GCGCGAGCAG
TACGGCATCG GCTATCAGTT CGACAAACGG CTCAACGAGG TCGTCAGCGT CAAATCGAGT
CTGCGCTATT CGCACGTCGA CGTCGACTTC AAGTCGCTGC AAATGAACGC GCCGCTCACC
GCCACCGGCA CGATCCCGCG CTGGGCATTG CGCTCGATCG AAGACGTCGG CGGGCTGTCG
ACCGATAACC GCGTCCAGTT TGATTTCGCC ACCGGCGCGC TGCAGCACAA GATCATCACC
GGCGTCGATT ATCAGAACAC GCTCAGCAAC TGGACCTACC AGCTCGGTGC CGCGACCGCC
CTCAACGTCG TCAACCCGGT GTATAATCAG CCGGTCGGCT CGCTCACCTC GCTGATCGAC
AACGGCCAGA AGCTGTCGCA GACCGGACTG TATGCGCAGG ATCAGCTCAG CCTGGGCGGA
TGGCGTGCGA CACTCGGCGT TCGCCACGAT TGGGCCGAGC AGAGCACCGA CAGCCGGCTC
GCCGGCTCGC GCTCCAATCA GTCGGACGAC AAGACGACCT ATCGGGCCGG ACTACTGTAT
CTGTTCGACA GCGGCATTGC ACCTTATGTC AGCTATTCGA CGTCGTTCGA GCCGGTCACC
GGCGTCGGCG TCGACGGGCA GCCGTTCATC CCGACCACGG CCGAGCAATA CGAAGGCGGC
ATCAAGTATC AGCCGACCTT TCTGCCGATG CTGTTCACCG CGTCGGTGTT CGACATCCGC
CAGCAGAATG TGCTGAGCCC GTCATCGGTG CCGGGCTTCA ATGTGCAGCA GGGCGAGGTC
CGGTCCAAGG GCGTCGAATT GGAAGCGCGC GGCAACGTCA CCGACGGCCT CGAGCTGATC
GGCGCGTTGA CGTTCCTCGA CACAAGGGTG GCGCGATCGT CGAATGCCCT GCTCGTAGGT
AACCGACCGC AGGCCGTTCC GGACTTCTTT GGCTCGATGT GGGCGAATTA CACGTTTCAG
TCCGGCCCGG TCACCGGCCT GACATTCGGT GGCGGCATCC GCCATGTCGG CGCCAGCTAC
GGCGACGACG CCAACACGCT GCGCACGCCG GCCTACACGG TGGTCGATGC GGCGTTGAAA
TACGATCTCG CCAATGTGGC GCCGAGCCTC AAGGGCACGA CCCTGACGCT CAACGTCAAC
AATCTGTTCG ATAAGGAATA CTATTCGAGC TGTTCGTCGG GGTTCTACTG TCAGTTCGGC
AACCGCCGCA CCGTCCTGGC CGGGATCAGG TACCGGTGGT GA
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| Protein sequence | MGSENKIVVG VAIALSLSGG PEALAQSASE PSVALPPVTV QPAERRAVRR AQPAPAAQRA
APARTPVREQ ATPPARPVNA SNTSDRYVAR TSATATKTDT RVLETPQSIS TVTRRQMDDQ
NVQTVANALR YSAGVLSDAD TNSRFDSVFI RGFGAFGTAT NYVSFLDGLK LPRGQAFANT
AIDPFLLDRV EVLKGPSAVL YGQTSPGGLV NQISRMPSAV PYNEVRVEGG SYGRFQSGVT
SQGALDKDGH WLYSLSAIGR TSGTRYDNVD EQRFAVAPAL TWAPDADTRF TVQSYYQKDP
KGGYFNSLYP TSLAPLQYRP YLNSKLNVGD PGFDSFEREQ YGIGYQFDKR LNEVVSVKSS
LRYSHVDVDF KSLQMNAPLT ATGTIPRWAL RSIEDVGGLS TDNRVQFDFA TGALQHKIIT
GVDYQNTLSN WTYQLGAATA LNVVNPVYNQ PVGSLTSLID NGQKLSQTGL YAQDQLSLGG
WRATLGVRHD WAEQSTDSRL AGSRSNQSDD KTTYRAGLLY LFDSGIAPYV SYSTSFEPVT
GVGVDGQPFI PTTAEQYEGG IKYQPTFLPM LFTASVFDIR QQNVLSPSSV PGFNVQQGEV
RSKGVELEAR GNVTDGLELI GALTFLDTRV ARSSNALLVG NRPQAVPDFF GSMWANYTFQ
SGPVTGLTFG GGIRHVGASY GDDANTLRTP AYTVVDAALK YDLANVAPSL KGTTLTLNVN
NLFDKEYYSS CSSGFYCQFG NRRTVLAGIR YRW
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