| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3889 |
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| Symbol | |
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| ID | 6411569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 4173230 |
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| End bp | 4175104 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713771 |
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| Product | Amidohydrolase 3 |
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| Protein accession | YP_001992862 |
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| Protein GI | 192292257 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCATTG CCTGCAATCC TGCATTCCAG TTTGCGTTTC GCTCGCTGTC GCTGCCGTCG
CGACGCAAGG TACTGAAAGG CGCGGTCGCG CTCAGCGCTG GCGTGCCGTT TGTGGCCGAA
GCGGTGGTAT CCAAATCGGC GAAGGCCGAT GGTGGTATCA ACGCGCGGCT GGCGAGCGCG
CTCGGTGGTG ATCAGGCCGC CGGCGCAGCG CCGCCGGTGA CGATCTTTAC CGCCAAGAAG
TTCATCACGA TGGAGCGCGG CACGCCGGAA GCGACCGCGG TCGCTGTTGC CGGCAAGCGC
ATCGTCGCGG CCGGCTCACT CGACGAGGTC AGGACGGCGG TCGGCAGTCG GCCGTTCACC
TTGGACGAGA CCTTTGCGAG CAAGATCGTG ATGCCGGGGC TGATCGATCA GCATCTGCAT
CCGGTGCTCG GCGCGCTGAC CCTGGCGGTC GAGGTGATCG CGCCGGAGGA TTGGGTGCTG
CCGGGCGGCA CCCACAAGGC GGCCGGCAGC GCCGACGCAT ACCAGGCGCG GCTGAAGGCG
GCCGATTCCA AGCTCGACAA GCCCGATGCC TGGCTGCTGA CCTGGGGCTA TCACGCGCTA
TGGCACGGCA AGCTCGACCG CGCCGCGCTC GACGCCATCA ATCCGACCCG GCCGATCGCG
GTGTGGCATC GCTCCTGCCA CGAATTCTAT CTGAACACCC CGGCGCTGGC GGCGCTCGGC
ATCACCGAAG CCATGACGCA GAACCAGGGG CAGGCGAGCG AGCAGTCGAA CTGGCGCGAG
GGGCATTTCT GGGAGGGCGG CCTCAATTTG ATGATGACGC CGATGCTCAA GGTGCTGGCG
ACGCCGGAGC GGCTGGCCTT CGGGCTGAAG CAGATGGTGA GCTATCTGCA CGCCAACGGC
GTCACCGCCT ATATGGAGCC GGGCGCGCTG TACACGCCGG ACATGTGGAA GCTGTACGAG
CAGATCCTCG GTGCGCCCGA GACGCCGATG TATGCGACGT TCATCGCCGA CGGCCGCGGC
ATCGTCGACC GGGTCGGGCT CGATGGTGCG CTCGATGCGG TGGAACAGCA GATCGCGGTG
GCGCCGGAGG CGCCGGGCCG CAAGCTGATG TTCTTCCCCG GCCAGATCAA ACTGTTCGCG
GACGGCGCCA TCATCTCGCA GCTGATGCAG ATGAAGGACG GCTATCTCGA CGGTCATCAG
GGCGAGTGGA TCATTCCGCC GGACGAACTG GAGCGCCGCG CCCGGCTGTT CTGGAATGCC
GGCTACCAGA TCCACACCCA CGTGAACGGC GATCTGGGCC TGGAGAAGCT GCTCGACATT
CTGGAGAAGC TGAACGCCGA GCATCCGCGC CCCGATCATC GCAGCGTGAT CGTGCATTTC
GCCAATTCGA CCGAGGATCA GGTGGGGCGG ATCAAGCGGC TCGGCGCGCT GGTCAGCGCC
AATCCGTACT ACACGACCGG CTTTGCGGAT AAATACAGCG CGGTGGGGTT GGGGCCGGAG
CGGGCGGACG CGATGGTGCG CGCCAAGTCG GTGCTCGATC AGGGCGTACC GCTGTCGTAC
CATTCCGATC TGCCGATGGC GCCGAGTGCG CCGTTGTATC TGGCGTGGTG CGGCGTCAAC
CGGCTCACGC CGTCGGGGCG CGTCGCCGGT CCCGAGCAGC GGGTCTCCGT CGATGCGGCG
CTGCGCGCGG TCACGATCGA GGCGGCGTAT TCCTGGCGCC ACGAGGATCA GCTCGGCAGC
ATCGCGCCGG GCAAGATCGC CAACTTCACC GTGCTCGAGC AGGACCCGTA CGCGGTGCCG
CCGGAGCAGC TGAAGGACGT GCCGATCTGG GGCACGGTGT TCGAGGGCCG GGTGTTTCCA
GTCGGCCGCG CTTAG
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| Protein sequence | MCIACNPAFQ FAFRSLSLPS RRKVLKGAVA LSAGVPFVAE AVVSKSAKAD GGINARLASA
LGGDQAAGAA PPVTIFTAKK FITMERGTPE ATAVAVAGKR IVAAGSLDEV RTAVGSRPFT
LDETFASKIV MPGLIDQHLH PVLGALTLAV EVIAPEDWVL PGGTHKAAGS ADAYQARLKA
ADSKLDKPDA WLLTWGYHAL WHGKLDRAAL DAINPTRPIA VWHRSCHEFY LNTPALAALG
ITEAMTQNQG QASEQSNWRE GHFWEGGLNL MMTPMLKVLA TPERLAFGLK QMVSYLHANG
VTAYMEPGAL YTPDMWKLYE QILGAPETPM YATFIADGRG IVDRVGLDGA LDAVEQQIAV
APEAPGRKLM FFPGQIKLFA DGAIISQLMQ MKDGYLDGHQ GEWIIPPDEL ERRARLFWNA
GYQIHTHVNG DLGLEKLLDI LEKLNAEHPR PDHRSVIVHF ANSTEDQVGR IKRLGALVSA
NPYYTTGFAD KYSAVGLGPE RADAMVRAKS VLDQGVPLSY HSDLPMAPSA PLYLAWCGVN
RLTPSGRVAG PEQRVSVDAA LRAVTIEAAY SWRHEDQLGS IAPGKIANFT VLEQDPYAVP
PEQLKDVPIW GTVFEGRVFP VGRA
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