| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3601 |
|---|
| Symbol | |
|---|
| ID | 6411277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3855126 |
|---|
| End bp | 3857300 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713481 |
|---|
| Product | PQQ-dependent dehydrogenase, methanol/ethanol family |
|---|
| Protein accession | YP_001992576 |
|---|
| Protein GI | 192291971 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGC CTGCTGACGC GGTGCGGACT GCGATCCGAC CTGTCCAACA ACCCGCGATA
CGATTAGTTG CGAGGCGGCT CGGCGCTGCG GCGCTGATGG CCGCGCTGCT GTCGCCGGCG
GTCGCCGCCG CGCAAGACAC CAAGGGCTCC GCCGCGCACA TCCGCGCGGT GACAGGCGCG
GTCGATAGCG CCGCGATCGT CGCCAACGCC AAGACCACCA AGGATTGGCC GAGTTACGGC
CTCGACTATG CCGAGACCCG CTTCAGCAAG CTCGACCAGA TCAACACCGA CAACGTCAAG
CAGCTCGGCC TGCAGTGGAG CTACAGCCTC GGCTCCGAAC GCGGCGTCGA AGCGACGCCG
GTGGTGGTCG ACGGCATCAT GTACGTCACC GCGTCATGGA GCGTCGTGCA CGCGATCGAC
ACTCGCACCG GCAAGAAGCT GTGGACGTTC GATCCCAAGG TCGATCACTC GAAGGGCTAT
CGCGGCTGCT GCGACGTCGT GAACCGCGGC GTCGCGCTGT ACAAGGGCAA GGTGTTCGTC
GGCGCCTATG ACGGCCGGCT GATCGCGCTC GATGCCGCGA CCGGCAGCAA GGCTTGGGAG
ATCGACACGC TGATCGACCA CGAGCACTCC TACACCATCA CCGGCGCGCC GCGGGTGTTC
AACGGCAAGG TGGTGATCGG CAACGGCGGC GCCGAATACG GCGCGCGCGG CTACGTCACC
GCCTATGATG CCGAGACCGG CAAGCAGGCA TGGCGCTGGT TCACGGTGCC GGGCGATCCG
AGCAAGCCGT TCGAAGACGA GTCGATGGAG AAGGCCGCCA AGACCTGGGA TCCGGCCGGC
AAATGGTGGC TCAATGGCGG TGGCGGCACC GCGTGGGACA CCATCACCTT CGATCCCGAC
CTCAATCTGA TCTATGTCGG CACCGGCAAC GGCTCGCCGT GGAATCGGCA TCTGCGCAGC
CCGGCGGGTG GCGACAATCT GTATCTGGCG TCGATCGTCG CGCTGAATGC CGACACCGGC
AAATACGTCT GGCACTATCA GGAGACGCCC GGCGACAACT GGGACTACAC TTCGACCCAG
CCGATGATCC TTGCGGACAT CGCGATCGAC GGCAAGCCGC GCAAGGTGAT CCTGCACGCG
CCGAAGAACG GCTTCTTCTT CGTGATCGAC CGCACCGACG GGAAGTTCAT CTCGGCGAAG
AACTTCGTCG ATGTGAATTG GGCGACTGGC TACGATGCCA ATGGCCGGCC GATCGAAGTG
CCCGAAGCGC GGTCGGCGGA CAAATCGTTC GACGCGATCC CGGGGCCGTA TGGCGCGCAC
AACTGGCACC CGATGTCGTT CAACCCGCAG ACCGGTCTGG TGTATCTGCC GGCGCAGGGC
GTGCCGGTCA ATCTCACCGG CGAGAAGGCG CTGACCCAGA ACAAGATGGA GCCGTTCAAG
TTCGGCTCGA CCACCGGCTG GAACGTTGGC TTCACGCTGA ACGCGGTGCC GCCGAAGAAC
CTGCCGTTCG GGCGCCTGGT GGCGTGGGAC CCGGTGCAGC AGAAAGAAGC CTGGCGCGCC
GAATACGTCT CGCCGTGGAA CGGTGGCACG TTGACTACCG CCGGCAACCT CGTGTTCCAG
GGCACGGCTG ACGGCCGCTT CGTCGCCTAC AACGCCAAGA CCGGCGAGAA GCTGTGGGAG
AGCCCGCTCG GCACCGGCGC AGTGGCGGCG CCTGCGACCT ACATGGTCGA CGGCGTGCAG
TACGTCTCGA TCGCGGTCGG CTGGGGCGGC GTGTTTGGCA TCAGCGCCCG CGCCACCGAG
ACCGAGGCGC CGGGCACGGT GTACACCTTC GCGGTCGGCG GCAAGGCCAA GATGCCGGAA
TTCGCCAAGT ATCAGATGGG CAACCTGCTC ACCGGCATCG AATACGATCC GAAGGACGTG
GCGGAGGGGA CCGCGATCTA CGTCGCGGCC GGCGCCACCT GCCACGGCGT GCCCGGTGTC
GACCGCGGCG GCAACGTCAA GAACCTCGGC TACTCCACCA CCGACCGGAT CGCCCACCTG
AAGGACATCG TGTTCAAGGG GCCGTTCCGC GACAAGGGGA TGCCGGACTT CACCGGCAAG
CTGACCGAGG CCGACGTGGT CAAGATCCAG GCCTTCATCC AAGGCACCGC GGACGCGATC
CGGCCGAAGA AATAG
|
|---|
| Protein sequence | MRKPADAVRT AIRPVQQPAI RLVARRLGAA ALMAALLSPA VAAAQDTKGS AAHIRAVTGA
VDSAAIVANA KTTKDWPSYG LDYAETRFSK LDQINTDNVK QLGLQWSYSL GSERGVEATP
VVVDGIMYVT ASWSVVHAID TRTGKKLWTF DPKVDHSKGY RGCCDVVNRG VALYKGKVFV
GAYDGRLIAL DAATGSKAWE IDTLIDHEHS YTITGAPRVF NGKVVIGNGG AEYGARGYVT
AYDAETGKQA WRWFTVPGDP SKPFEDESME KAAKTWDPAG KWWLNGGGGT AWDTITFDPD
LNLIYVGTGN GSPWNRHLRS PAGGDNLYLA SIVALNADTG KYVWHYQETP GDNWDYTSTQ
PMILADIAID GKPRKVILHA PKNGFFFVID RTDGKFISAK NFVDVNWATG YDANGRPIEV
PEARSADKSF DAIPGPYGAH NWHPMSFNPQ TGLVYLPAQG VPVNLTGEKA LTQNKMEPFK
FGSTTGWNVG FTLNAVPPKN LPFGRLVAWD PVQQKEAWRA EYVSPWNGGT LTTAGNLVFQ
GTADGRFVAY NAKTGEKLWE SPLGTGAVAA PATYMVDGVQ YVSIAVGWGG VFGISARATE
TEAPGTVYTF AVGGKAKMPE FAKYQMGNLL TGIEYDPKDV AEGTAIYVAA GATCHGVPGV
DRGGNVKNLG YSTTDRIAHL KDIVFKGPFR DKGMPDFTGK LTEADVVKIQ AFIQGTADAI
RPKK
|
|---|
| |