| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3460 |
|---|
| Symbol | |
|---|
| ID | 6411134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3705508 |
|---|
| End bp | 3706137 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642713339 |
|---|
| Product | CDP-alcohol phosphatidyltransferase |
|---|
| Protein accession | YP_001992436 |
|---|
| Protein GI | 192291831 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0558] Phosphatidylglycerophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00560] CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.675367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTATG TAGAAAACCA GCCCGCTCAA CCGTCGAAAG TCGAGGTTTT TCGGCGGATT
TGGGCCGGAA GCCGGGAACG TCGCGTGAGC ATTCCAAACA TCATTACGCT TTGCCGCATC
CTGTTGGTGC CGGTGATCGT CTGGGCGATC GCGTCCAATG AGATGGAAAT CGCCTTTGCG
GTGTTCGTGG TGGCCGGGGT CAGCGATGCG GTCGACGGGT TTCTGGCCAA ACGCTTCAAC
ATGTCCAGCG AGCTCGGCGC GCTGCTCGAT CCGCTCGCCG ACAAGGCGCT GCTGGTGTCG
ATCTACGTCT CCCTGGGGAT CTGGGGAGCG ATCCCGCGCT GGCTGGTGAT CCTGGTGGTG
TCGCGCGACA TCATGATCGT CGGTGCGGTG ATGATCTCCT GGGTGTTCGG CAAGCCGATC
CCGATGAAGC CCTTGATGGT GTCGAAGCTG AACACCGTCG CCCAGGTGTC GTTCGCCGCG
CTGGTGCTCG GCGCGCTCGC CTTCGGCTTC GAGCCGGCGC CCTACGACCT CTTCCTGATG
GGCGCGGTCA CAGTCTTGAC CTTGCTTTCC GTCTCCCTCT ATCTCGTCGA GTGGATGCGG
CATATGAGCA CGATCGAGCC AAGCCGTTGA
|
|---|
| Protein sequence | MVYVENQPAQ PSKVEVFRRI WAGSRERRVS IPNIITLCRI LLVPVIVWAI ASNEMEIAFA
VFVVAGVSDA VDGFLAKRFN MSSELGALLD PLADKALLVS IYVSLGIWGA IPRWLVILVV
SRDIMIVGAV MISWVFGKPI PMKPLMVSKL NTVAQVSFAA LVLGALAFGF EPAPYDLFLM
GAVTVLTLLS VSLYLVEWMR HMSTIEPSR
|
|---|
| |