| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3456 |
|---|
| Symbol | |
|---|
| ID | 6411130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3699964 |
|---|
| End bp | 3700887 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713335 |
|---|
| Product | protein of unknown function UPF0187 |
|---|
| Protein accession | YP_001992432 |
|---|
| Protein GI | 192291827 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3781] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0228488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTTC GACCACAGCC TAATCTGCTT CAGCTCTTCT TTCTGGTTCA AGGCTCGGTG
GTGCAGCGGA TCTTTCCGCA GGCACTCGTC ATCGCCGGCC TCTCAGTCGC GGTGGTGTGG
GCGCATCACG CCTATCCGGG CCTCGTCTCG GATTTCAACA GCGCGCCGTT CACGGTGCTC
GGCATCGCGC TGTCGATCTT CATGGGCTTC CGCAACAACG CCTGTTACGA CCGTTGGTGG
GAAGCGCGCC GCCACTGGGG CGAGCTGATC TGCCTGAGCC GCAATCTGGC GCGGCAGACG
CAGATCCTGC CCTGCTCCGG CGACGACCCG GAGCAAAGCC GGCGGAAGCT GCTGACGCTG
GCGATGGCGT TCGCCCAAGC CCTGGTGCTG CATCTTCGCC CGGGCAGCGA CACCACCAAG
GTGACGCGCC GCCTCAGCGC CGAGACCCGG GCGCGCTATG AGGCGAGCCG CAACGCGCCC
GAAGTGATCC TCGCGGCGAT GCAGGCCGAG CTGGCGGCGC TGCATCGCAG CGGCGAGCTG
CGCGACATCC CGTTCCAGAT CATCGACCGC ACCATCGGCC AGATGGCGAT GGTGCAGGCC
GCATGCGAAC GGATCCGTTC GACGCCGGTG CCGTTCGGCT ATTCGCTGCT GCTGCACCGA
ACCGCTTACG TGTTCTGCCT GCTGCTGCCG TTCGGCTTCG CCAACACCCT CGGCTGGCTG
ACGCCGTTCG CCACCGCGCT GGCGGCCTAC ACCTTCTTCG GCCTCGACGC GCTCGGCACC
GAGCTGGAAG AGCCGTTCGG CCAATTGCCC AACGATCTGC CGATCGCTGC GCTGGCCGAT
ACGATCGAGA TCAATCTGCG CGAGGCGCTC GGCGAAACCG ATCTGCCGCC CTTGCCGGCA
CCGGTCGACC ACATTCTGGT GTGA
|
|---|
| Protein sequence | MIVRPQPNLL QLFFLVQGSV VQRIFPQALV IAGLSVAVVW AHHAYPGLVS DFNSAPFTVL
GIALSIFMGF RNNACYDRWW EARRHWGELI CLSRNLARQT QILPCSGDDP EQSRRKLLTL
AMAFAQALVL HLRPGSDTTK VTRRLSAETR ARYEASRNAP EVILAAMQAE LAALHRSGEL
RDIPFQIIDR TIGQMAMVQA ACERIRSTPV PFGYSLLLHR TAYVFCLLLP FGFANTLGWL
TPFATALAAY TFFGLDALGT ELEEPFGQLP NDLPIAALAD TIEINLREAL GETDLPPLPA
PVDHILV
|
|---|
| |