| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3305 |
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| Symbol | |
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| ID | 6410976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3554696 |
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| End bp | 3557836 |
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| Gene Length | 3141 bp |
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| Protein Length | 1046 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713182 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_001992282 |
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| Protein GI | 192291677 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCGC GCTTCTTCAT CGAACGGCCG GTGTTGTCCA ACACCCTCGC CTTCCTGATC
GTCCTGCTCG GCGCCCTGGC GCTGATGCGG CTGCCGGTGT CGCAATATCC TGACGTGGTG
CCGCCGACGG TGTCGGTCTC AGCGACCTAT CCGGGCGCCA GCGCGCGCAC CGTGATGGAT
TCGGTGGCGC TGCCGATCGA GCAGCAGGTC AACGGCGTCG AGGGCATGAT TTATATGCAA
TCGACCAGCG CCAGCGACGG CAGCTACAAT CTGGTCGTCA CCTTCGACAT CGGCACCGAT
CCGAACATGG CGCAGGTGCT GGTGCAGAAC CGGGTGTCGC TGGCCAGCGC GCAATTGCCG
ACGTCGGTCT CGACCCAAGG CCTCAACATC AAGAAGAAGT CGACCGCGAT CCTGCAATTC
GTCAGCTTGG TTTCGTCCGA CGGCCGCTAC GACAACCTGT TTCTCGCCAA CTACGCCAAG
ATCAACATCC AGAACGAGCT GGCGCGGCTG CCCGGCGTTG GCGACGTCTC GGTGCTCGGC
TCCGGCTCCT ACGCGATGCG GATCTGGCTC GATCCGGACA AGCTGCAAAG CTATGGCCTG
ACGCCGAGCG ACGTGATCAG CGCCGTGCAG CAGCAGAGCA ACCAGGTCAC CGCCGGCCTG
GTCGGCGGCC CGCCGGCGCC GTCGATCGTG AATTTCCAGT ACGCGCTCGA CGTCGTGGGC
CGCTTCAACG CAGCCACCGA TTTCGAGAAG ATCGTGGTCA AAGCGGTCGA CCAGGGCGGC
GGCCAGTTGG TGCGGATCGG CGACATCGGC CGCGTCGAGC TTGGCGCGTC GTCTTACGGC
CAGAACGCTA CGCTCGACGG CAAGCCCTCG GCCGCGATCG CGATTTCGCT GCTCACCGGC
GCCAACGCGC TGTCGGTGGC AGAGGCGGTG AACGCCAAGA TGAAGGAGAT GGCGGGCTCG
TTTCCGGCCG GTCTCGACTA CAAGGTGTCG TTCGACAGCA CCAAGTTCAT CACCGCCTCG
GTCGACGAGG TGTACGAAAC GCTGATCATC GCCGCCGTGC TGGTGCTGGT GGTGATCCTG
ATGTTCCTGC AGGACTGGCG GGCGATGCTG GTCCCCGCCA CCACCGTGCC GGTGACGATC
ATCGGCGCGT TTGCGGCGAT GTCGGCGATG GGCTTCACGG TCAACACCAC CAGCCTGTTC
GCGCTGGTGC TGGCAATCGG CATCGTGGTC GATGACGCCA TCGTCATCGT CGAAGGCGTA
TCCCGGCACA TCGCCGGCGG GATGTCGAGC CGCGAGGCCG CGGTGAAGGC GATGTCGGAG
CTGTTCGGCC CGATCATCGG AATCACCCTG GTGCTGATGG CGGTGTTCCT GCCGGCCGCC
GCCCTGCCCG GCCTCACCGG CAAGATGTAT CAGCAGTTCG CGCTGGTGAT CGCCGCCACC
GCGCTGATCT CGGCCGTCAA CGCGGTGACG CTGAAGCCGA CGCAATGCGC GCTGTGGCTG
CGCGCGCCGG TGCCGCCGGA GCAGCGCGGC ATCGTCTATC GCGTCTTCAA CGCGGTGTAT
GCGCGTTGCG AGGCGGTGTA CGCGGCGCTG ATCCGCCGTC TGGTGGCGTT CAGCATCCCG
ACCACCATCG TCGGACTGGC GCTGGTCGGG GTCGCGTTCT ACGGGCTGTC GCGGGTGCCA
ACCGCCTTCC TGCCCTCGGA AGATCAGGGC TATTTCATCA TCAGCCTGAA GCTGCCGGAT
GCGGCCTCCG CCGGGCGCAG CGACGCCGCG GTGGCCAAGG CGGTCGAGCT GGTGCGCAAG
ACTCCGGGCG TGGAAAGCGT GATCGGCGTG TCGGGCATCT CGCCGCTCGA CAACAACGCC
ACGATGTACA ACGCCGGCAT GCTGTACGTG GTGCTGCACG ACTGGGATCA GCGCAAGACC
AAGGATCTCA GCATCGATGC GATCGCCGCC AAGGTGCGCG CCGCGCTCGC CCAGCTCGAC
ACCGCGACCG CGCTGGTGCT GATGCCGCCG CCGATCCAGG GGATCGGCAA CACCAGCGGC
TTCACCATGA TGGTGGAGAT GAAAAACGGC AGCTCGGATT TCCTGGCGCT GCAGAACGCC
ACCGAACAGC TCGCCGCCAA CGCCTCGACC CAGAGCGGCA TCACCCACGC GGCCTCGACC
TTCAAGGGCA ACGTCAAACA GCTTCGCTTG GTGGTGGACC GGATGAAGGC GGAGACGCTC
GGCGTCACCG TCGGCCAGGT GTTCTCGGCG GTCGAGAGCT ATCTCGGCTC GACCTACGTC
AACCAGTTCA CCAAGTTCAA CAACGTGTTC CAGGTCTATG TCCAGGCCGA CGCGCCATTC
CGGCTGCGCC CCGACGACGT GTTGAAGCTG AAGGTGAAGG GCTCGGGTGA CCAGATGGTG
CCGGTCGGCG CGGTCGCGTA TCTGACCGAC GAGGTCGGCC CGCCGCTGAT CACGCTGTAC
AACCTGTACC CGGCCGCGAC ACTGGTCGGC AGCCCGGCGG CCGGCTTCAG CTCGGGCGAA
GCGATGTCGC TGATGAGCGA AGTCGCGGCC AAGTCGCTGC CCGCTTCGAT GGGTACCGCC
TGGACCGGGA TGTCGTATCA GGAGCAGGTG GTCGGCGATC AGATCTACTA CGTGTTCGCG
GTGGCGCTGC TGCTGGTGTA TTTCGTGCTC GCCGGACAAT ACGAAAGCTG GCTGCAGCCG
CTGGCGGTGA TCCTGGCGGT GCCGCTGACC CTGCTCGGCA CCGTCGCGGC GCTGGAATGG
TCAGGCCTGC CGAACGATCT CTATACGCAA ATCGGCATCG TGCTGCTGAT CGCACTGGCG
GCGAAGAACG CGATTCTGAT CGTCGAATAT GCGCGCGAGA AATGTATGGA AGGCATGCCG
ATCGCCGAGG CCGCAGTGGA GGCCGCGCGG CTCCGGTTCC GCCCAATCCT GATGACCTCG
TTCGCCTTCA TCTTCGGCAT GCTGCCGCTG GCGCTCGCGA CCGGCGCCGG TGCCGGCGCC
CGCGTGTCGC TCGGAATCGC CGTGGTGGCC GGTATGCTGG CCTCCACGGG GCTGGCGCTG
CTGTTCGTGC CGGCGTTCTT CGCCGTGCTG CAGCGGATGG GGACGCGGCG TGAAGCCGCC
GCCTCTCCGG CCGAGGGATA A
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| Protein sequence | MFSRFFIERP VLSNTLAFLI VLLGALALMR LPVSQYPDVV PPTVSVSATY PGASARTVMD
SVALPIEQQV NGVEGMIYMQ STSASDGSYN LVVTFDIGTD PNMAQVLVQN RVSLASAQLP
TSVSTQGLNI KKKSTAILQF VSLVSSDGRY DNLFLANYAK INIQNELARL PGVGDVSVLG
SGSYAMRIWL DPDKLQSYGL TPSDVISAVQ QQSNQVTAGL VGGPPAPSIV NFQYALDVVG
RFNAATDFEK IVVKAVDQGG GQLVRIGDIG RVELGASSYG QNATLDGKPS AAIAISLLTG
ANALSVAEAV NAKMKEMAGS FPAGLDYKVS FDSTKFITAS VDEVYETLII AAVLVLVVIL
MFLQDWRAML VPATTVPVTI IGAFAAMSAM GFTVNTTSLF ALVLAIGIVV DDAIVIVEGV
SRHIAGGMSS REAAVKAMSE LFGPIIGITL VLMAVFLPAA ALPGLTGKMY QQFALVIAAT
ALISAVNAVT LKPTQCALWL RAPVPPEQRG IVYRVFNAVY ARCEAVYAAL IRRLVAFSIP
TTIVGLALVG VAFYGLSRVP TAFLPSEDQG YFIISLKLPD AASAGRSDAA VAKAVELVRK
TPGVESVIGV SGISPLDNNA TMYNAGMLYV VLHDWDQRKT KDLSIDAIAA KVRAALAQLD
TATALVLMPP PIQGIGNTSG FTMMVEMKNG SSDFLALQNA TEQLAANAST QSGITHAAST
FKGNVKQLRL VVDRMKAETL GVTVGQVFSA VESYLGSTYV NQFTKFNNVF QVYVQADAPF
RLRPDDVLKL KVKGSGDQMV PVGAVAYLTD EVGPPLITLY NLYPAATLVG SPAAGFSSGE
AMSLMSEVAA KSLPASMGTA WTGMSYQEQV VGDQIYYVFA VALLLVYFVL AGQYESWLQP
LAVILAVPLT LLGTVAALEW SGLPNDLYTQ IGIVLLIALA AKNAILIVEY AREKCMEGMP
IAEAAVEAAR LRFRPILMTS FAFIFGMLPL ALATGAGAGA RVSLGIAVVA GMLASTGLAL
LFVPAFFAVL QRMGTRREAA ASPAEG
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