Gene Rpal_3254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3254 
Symbol 
ID6410924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3500384 
End bp3501028 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content62% 
IMG OID642713130 
ProductCMP/dCMP deaminase zinc-binding 
Protein accessionYP_001992231 
Protein GI192291626 
COG category[F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0590] Cytosine/adenosine deaminases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA CCAAAATCGA GTCTGCCTCG ACGCTTGATA CGCTGTTCGC GTCGGTGACC 
GTCGTTCACC GCAGGAATTT TCTCGCAACC GGCGCTGCCG CCTTCGGTGC GGCTGTATTG 
CCTGCCGGGG CGACGGTTGC GGATGCTAAG CCTGCACTGG CCACGGCGCC GACGGAGCAA 
GATCGTCGCT ACATGACGCA GGCCATCGAA TTGATGCGCA AGGCAGGTGT GGTCGAAAAG 
ACAGGTGGCG CGTTCGGGGC CGTGATCGTG CGTGATGGCG AAGTACTCTC GGCGACCGGC 
AACAGTGTGC TGCGCGACAA CGATCCGTCC GCCCACGCCG AAGTCAATGC GATCCGCGCC 
GCGTGCAAGA AGGTTGGCGC GCCGAACCTG CGCGGCGCAA CGATGTACAC GAGCTGCGAA 
TGCTGTCCGA TGTGCTACGC CACCGCTTAC TGGGCGCGGC TCGATCGGAT CTTCTACGCG 
GCGTCGTGGA CCGACTACGC GGACTTGTTC GACGATTCCA ATATCGGCGC TGACATGAAG 
AAGCCCTACG CAAAACGCCA GGTTAAGATC GCGCAGATGA TGCGCGGCGA TGCGCAGAAG 
GTCTGGAATG AGTTCCGCGC GCTGCCGGAT CGGGCTCGCT ACTGA
 
Protein sequence
MKKTKIESAS TLDTLFASVT VVHRRNFLAT GAAAFGAAVL PAGATVADAK PALATAPTEQ 
DRRYMTQAIE LMRKAGVVEK TGGAFGAVIV RDGEVLSATG NSVLRDNDPS AHAEVNAIRA 
ACKKVGAPNL RGATMYTSCE CCPMCYATAY WARLDRIFYA ASWTDYADLF DDSNIGADMK 
KPYAKRQVKI AQMMRGDAQK VWNEFRALPD RARY