| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3234 |
|---|
| Symbol | |
|---|
| ID | 6410904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3478824 |
|---|
| End bp | 3480713 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642713110 |
|---|
| Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
|---|
| Protein accession | YP_001992211 |
|---|
| Protein GI | 192291606 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAG CCTCATCCAA CTGGATTGGC AAGACCATCA TGACGATCGT GATGGGCGTC
CTGATCGTCA GCTTCGGAGT CTGGGGTATT GCCGACGTAT TCCGCGGCTT CGGCCGGTCT
ACGCTCGCCA AGATCGGCAG CACCGAAATC TCCACCGAGC AATTCCGCCA GACCTATAAC
GACCGTCTGC AGCAGATCGG CCGCCAGTTC GGCCGGCCGC TGACGCCGGA TCAGGCGCGC
GCGATCGGGA TCGATCGCCA GGTGCTGCAG CAGACGATCG CCGAAGCAGC GCTCGACGAG
GACGCGCGCC GGCTCGGGCT CGGCCAGTCC GACGCCGACA CCATGAAGTC GATCCTGGAG
GATCCGAACT TCAAGGGCGC CAACGGCCAG TTCGACGCCA ATCGCTTCCA GCAGCTGATC
CGCCAGTTCG GCTTCACCGA GCAGCGCTAC CTGGCCGAGC AGCGCCGTGT CGCACTCCGC
CGCCAGATCG CCGGCAGCCT CACCGCCGGC CTCGAGCCGC CGAAGACGCT GATGCAGGCG
CTGAGCCAGT TTCAGAACGA AGAGCGCGCG ATCGACTACC TGAAGCTCAC CGATGCGCAG
GCCGGCACCA TCGCGGCGCC CTCGCCCGCC GACCTCACCG CGTTCTACGA CTCGCACAAG
GCGCAGTTCC GCGCGCCGGA GTACCGCAAG GTGTCGTTCC TGGTGGTGAC GCCGGAATCG
ATCGCGAAGT GGGCCGAGGT GTCCGACGCC GACGCGCAGA AGCTGTTCGA GCAGCGCAAG
GACAAGCTGT CGACGCCTGA GAAGCGCCAG ATCCTGCAGA TCGTCTTCCC CAGCGTCGAA
GAGGCTCAGG CGGCCCGCGC CAAGATCGCC AGCGGCACCA GCTTCGCCGA CCTCGCCAAG
GAGCGCGGCG TCAAGCCGGG CGATCTCGAC CTCGGCCTGG TCAGCCAGTC TGAGATGCTC
GACCAGAAGG TCGCCGCAGC CGCGTTCGCG CTGCCGCTGA ACGAAGTCAG CCAGCCGGTG
CAGGGACAGT TCGGCACCGT GCTGCTCGAA GTCACCAAGA TCGAGCCGGG CAAGCAGCCG
GACTACGCCA GCGTGGCGGC CAGCCTGAAG CGCGACCTCG CCCAGGAGCG CGCCCGCAAG
CAGGTGCAGG AGCTGCACGA CAAGATGGAA GACGCCCGCG GCGGCGGCGC CAGCGTGGTC
GATGCGGCCA AGCAGCTCGG CCTCACCGCC GTGACGGTCG ACGCGCTCGA CCGTGCCGGA
CGCGGGCCGG ACGGCGCGCC GGTGGCGTCG ATCCCGCAGG GGCTCGAACT CGCCAACGCC
GCCTTCAACA GCGAGCCGGG CGTCGACAAC GACGCGATCA GCTTCCAGAA CGGCTACGTC
TGGTACGACA TCCTCGGCAT CACGCCCTCG CATGAGCGGC CGCTCGACGA GGTCAAGGAC
AAGGTCGAAG CCGGCTGGCG CGCCGAACAG GTGACGGAGA AGCTGCGCAA GCTCGCCGCC
GAGCTGGTGC AGAAGATGCA GGGCGGCGCC AAGCTTGCGG ATGTCGCGCC GGCTGGCGTT
ACCGTGCAGA CGGCCTCCGG CATCAAGCGC GAAGGCGCCG ACGCCGGCTT GCCGAACACG
GTGGTCGACG CGGTGTTCCG CACCGCCAAG GACGGCGCCG GCCAGGTTCA GGGCGGCAGC
GCCACCGAGT GGTACGTGTT CCGCGTCACA GGCGACACTG TGCCGACTGC CGATCTCAAC
GCGCCGCAGA TGCAGCAATT GAAGGACAAT CTGGTGCAGC GGCTGCGCGA CGAACAGGTC
GGCGAGTACA TCGCCTGGCT GGAGAAGGAC ATCGGCACCA AGGTCAATCA GGAAGCGGTG
GCGCAGGCAA CGGGGGCGGC GGCGAACTGA
|
|---|
| Protein sequence | MRKASSNWIG KTIMTIVMGV LIVSFGVWGI ADVFRGFGRS TLAKIGSTEI STEQFRQTYN
DRLQQIGRQF GRPLTPDQAR AIGIDRQVLQ QTIAEAALDE DARRLGLGQS DADTMKSILE
DPNFKGANGQ FDANRFQQLI RQFGFTEQRY LAEQRRVALR RQIAGSLTAG LEPPKTLMQA
LSQFQNEERA IDYLKLTDAQ AGTIAAPSPA DLTAFYDSHK AQFRAPEYRK VSFLVVTPES
IAKWAEVSDA DAQKLFEQRK DKLSTPEKRQ ILQIVFPSVE EAQAARAKIA SGTSFADLAK
ERGVKPGDLD LGLVSQSEML DQKVAAAAFA LPLNEVSQPV QGQFGTVLLE VTKIEPGKQP
DYASVAASLK RDLAQERARK QVQELHDKME DARGGGASVV DAAKQLGLTA VTVDALDRAG
RGPDGAPVAS IPQGLELANA AFNSEPGVDN DAISFQNGYV WYDILGITPS HERPLDEVKD
KVEAGWRAEQ VTEKLRKLAA ELVQKMQGGA KLADVAPAGV TVQTASGIKR EGADAGLPNT
VVDAVFRTAK DGAGQVQGGS ATEWYVFRVT GDTVPTADLN APQMQQLKDN LVQRLRDEQV
GEYIAWLEKD IGTKVNQEAV AQATGAAAN
|
|---|
| |