Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3220 |
Symbol | mdoD |
ID | 6410890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3466007 |
End bp | 3467518 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642713096 |
Product | glucan biosynthesis protein D |
Protein accession | YP_001992197 |
Protein GI | 192291592 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.321251 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGATTGA ACCGGCGGCA AGTTCTGACC GGGCTGGCGG CGTTGCCGCT GTTGCAGGCA AAGCCCGATC CCGCCGCGGC GGACCGCTCT TCCTCGATCG ACTTCGATCC TTGGATGGTG CGCAAGCTGG CGCGCGAGCT GGCGAGCAAA CCTTATGAGG CGCCCGACAG CTCGTTGCCG GCCTCGCTGA ACGATCTGAG CTACGACGCC TACCGGTCGC TGCGCTTTCG ACCCGAGCGC GCCCTCTGGC GTGCCGAGAA CCTGCCGTTT CAGGTCCAGT TCTTCCACCG CGGCTTCCTC TACAAGAACC GGGTGACGAT CTTCGAAGTC GCCGATGGCA AGGCGCGCCA CGTGCCGTAT CGCGCGGACG ATTTCTCGTT CGGCGACGTC GCGCCGCCGC CGGATGCCGA TCTCGGCTTT GCGGGGTTTC GGATTCACGC GCCGCTGCAG CGTGCGGACT ACTACGACGA GGTCAGCGCC TTCCTCGGAG CGGCCTACTT TCGCGCCGTC ACCAAGGGCG AGCGTTACGG CCTCTCTGCG CGCGGCCTGT CGATCGACAC CGGCCAGTCG AGCGGCGAGG AATTCCCGCT GTTCAAGACA TTCTGGCTCG AGCGCCCTAC TCCGGGCGCA TCGTCGATGG TGGTGCATGC GCTGCTCGAC AGCAAGAGCG TCGCCGGCGC CTACCGCTTC ACCATCCGCC CCGGCGACAC CACGGTGTTC GACGTCGAGA TGGCGCTTTA TCCGCGCGTC GATCTGCAGC ATGCCGGACT GGCGCCGATG ACCAGCATGT TTCTGTTCGG CCCGAACGAT CCGGCCGATA CCCCGGACTT CCGTGCCGCG GTGCACGATT CCGACGGACT CGCGATCTTC AACGGCAGCG GCGAAGAGCT GTGGCGGCCT CTGTGCAATC CGAGGGATCT GCAGATCAGC TCGTTCGGTG ACCGCAACCC GCGCGGCTTC GGCCTGATGC AGCGCGAACG CAGCTTCGCT AACTATCAGG ATCTCGAATC CCGGTACGAG CTGCGGCCGA GCCTGTGGGC CGAGCCGATC GGCGACTGGA CCGATGGCGC CGTCAAGCTG ATCGAGATTC CCACCCGCGA AGAGGTGCAC GACAATATCG CGTCGTTCTG GGAGCCGAAG CAGCCGCTAC GCGCCAAGGG CGAACACATC TACACCTATC GGCTGCACTG GGGACCGGAT GCGCCGAAGC CCAAGGGGCT CGCGCGGTTC GTGCGGACCG GCATCAGCGC GCGCGGCGAC AATGAACGGT TGTTCGTGCT CGATCTTGCC GGTGACCGGC TGAAGACCGT CGATGCCGCC GCGGTCCGCG GCGTGGTCAC CGCCGACAAG GGCGAGATCC GCAATATCGT AACCCAGCCG AACCCGGCGA TGGGCGGATG GCGGCTCAGC TTCGACCTCG CGCAGGCGCG AGCCCCGGTC GAATTACGGG CGGTCGTGTG CGAGGGCGAC GCGGCGGTCT CGGAAGTTTG GCTGTACCGA TGGACGCCGT GA
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Protein sequence | MRLNRRQVLT GLAALPLLQA KPDPAAADRS SSIDFDPWMV RKLARELASK PYEAPDSSLP ASLNDLSYDA YRSLRFRPER ALWRAENLPF QVQFFHRGFL YKNRVTIFEV ADGKARHVPY RADDFSFGDV APPPDADLGF AGFRIHAPLQ RADYYDEVSA FLGAAYFRAV TKGERYGLSA RGLSIDTGQS SGEEFPLFKT FWLERPTPGA SSMVVHALLD SKSVAGAYRF TIRPGDTTVF DVEMALYPRV DLQHAGLAPM TSMFLFGPND PADTPDFRAA VHDSDGLAIF NGSGEELWRP LCNPRDLQIS SFGDRNPRGF GLMQRERSFA NYQDLESRYE LRPSLWAEPI GDWTDGAVKL IEIPTREEVH DNIASFWEPK QPLRAKGEHI YTYRLHWGPD APKPKGLARF VRTGISARGD NERLFVLDLA GDRLKTVDAA AVRGVVTADK GEIRNIVTQP NPAMGGWRLS FDLAQARAPV ELRAVVCEGD AAVSEVWLYR WTP
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