| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3179 |
|---|
| Symbol | |
|---|
| ID | 6410849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3426252 |
|---|
| End bp | 3426905 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642713057 |
|---|
| Product | protein-L-isoaspartate O-methyltransferase |
|---|
| Protein accession | YP_001992158 |
|---|
| Protein GI | 192291553 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2518] Protein-L-isoaspartate carboxylmethyltransferase |
|---|
| TIGRFAM ID | [TIGR00080] protein-L-isoaspartate(D-aspartate) O-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0153656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGCC CCGCGGCGCC GCCGCCCGAA AAGATGATGT TCCAGCTCAG CCTGCGGCGG
CGCGGCATCA GCGATCAGGC GGTGCTGCGG ACGATGGAGG CGGTGCCGCG CGACCAGTTC
GTCGACCCCA ATTATCGCGA CGGCGCCTGG CGCGACACCG CGCTGCCGAT CGCCTGCGGC
CAGACCATCA GTCAGCCGTT CGTGGTCGCC TTCATGACCG AGCAGCTCGA GCTGCGTCCG
CGCGACCGCG TGCTCGAGAT CGGCACCGGC TCCGGCTACC ACGCGGCGGT GCTGTCGCGG
CTGGCGGCGG ACGTGCTCAG CTTCGAGCGC TTCAAGACGC TGGCCGACCG CGCCCGCAAA
CGACTCGCCG AGCTGGGGTG CAGCAATGTC GAGGTGGTGT TCGGAGACGG ATTCGATCTG
CCGGAGACCG CCGGCACATT TGATCGCATC CTGATCACTG CCGCCGTCCC GGAGCTGCCC
GCGCGGCTGC TCGAGCGACT CGATCCTGGC GGTGTTCTGA TCGCACCGGT CGGGCCGCCG
AACGGTCGGC AGACACTGCT GCGTGTGCGC CGCACGCCGA ACGGCGACGA GCACAAGGCC
CTGGGGGAGG TCCGTTTCGT GCCCGCGCTC CGCGGCATCG CACGCGAGCT TTGA
|
|---|
| Protein sequence | MPSPAAPPPE KMMFQLSLRR RGISDQAVLR TMEAVPRDQF VDPNYRDGAW RDTALPIACG
QTISQPFVVA FMTEQLELRP RDRVLEIGTG SGYHAAVLSR LAADVLSFER FKTLADRARK
RLAELGCSNV EVVFGDGFDL PETAGTFDRI LITAAVPELP ARLLERLDPG GVLIAPVGPP
NGRQTLLRVR RTPNGDEHKA LGEVRFVPAL RGIAREL
|
|---|
| |