| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3120 |
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| Symbol | |
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| ID | 6410791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3364659 |
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| End bp | 3366542 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642713000 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001992101 |
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| Protein GI | 192291496 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.525657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAGCG CCGACGCTTC CCAGCTCACA GCCGGTGAAC GGCTCCACGC GCCGCAGCGT
AAAACGCTGA TCGGCGCGCT GGAGGCTGCG CTCGGCCTGA TGGTCGAGAT TCCGGCGGCG
ATCCTGGTGG TCGTCGAGAT TGTCGTGCTG TTCGCCGGCG TGGTATCTCG CTACGTCTTC
CACAGCCCGC TGATCTGGTC CGACGAACTG GCGTCGATCC TGTTTCTGTG GCTGGCGATG
TTCGGCGCGG CGGTCGCGTT CCGCCGCGGC GAGCACATGC GGATGACCGC GATGGTGGCC
GGGGCCTCCC CGCGCCTGCG CGCCTGGCTC GATCTGGTCG GCATCTGTGC GGCGCTGGCG
TTCCTGCTGC TGATCGCGGC ACCGGCCTAC GAATACGCCT ACGAGGAAAG CTACATCACC
ACGCCGGCTC TCTCGATCGC CAACAGCTGG CGCGCCGCGG CGCTGCCGGT CGGCATTGCG
CTGATGGCGC TGTTCGCAGC TCTGCGGCTG ATCCGGTTCG GCGATCTCAA GCTGGTCGTT
GGCGCTGCGC TGACGGTCGC GCTGCTGATC GGCGCGTTCT GGCTGGCGCA GCCGCTGTTC
AAGCCGCTCG GCAACATCAA TCTGGTGATC TTCTTCGTCG GCGTGGTGGC TTGTTGCGTG
TTCGCCGGCG TGCCAATCGC GTTCGGATTT GGCCTCGCGA TCTACGGTTA TCTGGCGCTG
ACGACGACGA CGCCGCTCTT GATCCTGGTC GGCCGGATGG ACGAGGGCAT GAGCCACCTC
ATCCTGCTGT CGGTGCCGCT GTTCGTCTTC CTCGGCCTGT TGATCGAGAT GACCGGGATG
GCGCGGGCGA TGGTGGCGTT TCTCGCCAGC CTGCTCGGCC ACGTCCGCGG CGGCCTGCAC
TACGTGCTGG TCGGCGCAAT GTACCTGGTG TCCGGCATCT CCGGCTCGAA GGCCGCCGAC
ATGGCCGCGG TCGCGCCGGT GCTGTTTCCG GAGATGAAGG AGCGCGGGGC CAAGCCCGGC
GATCTGGTCG CCCTGCTCTC CGCCACCGGC GCCCAGACCG AAACCATTCC GCCGAGCTTG
GTGCTGATCA CCATCGGCTC GGTCACCGGC GTGTCGATCT CGGCGCTGTT CACCGGCGGC
CTGCTGCCCG GCGTGGTGCT GGCGATCATG CTGAGCGCCC TGGTGTGGTG GCGCTATCGC
GGCGAGGATC TCAGCCACGT CAAGCGCGCA CGCGGCAGCG AGATCGGCAA GGCGTTCATC
GTCGCCCTGC CCGCGCTGGC GCTGCCGTTC GTGATCCGCG CCGCCGTGGT CGAAGGCGTC
GCCACCGCCA CCGAAGTTTC GACCATCGGC ATCGTCTATG CCGTGGTGGT CGGCATCCTG
GTGTACCGCA AGTTCGACTT GCGCCGGCTG CGGCCGATGC TGGTCGAGAC CGCGGCGCTG
TCGGGTGCGA TCCTGTTGAT CATCGGCACC GCGACCGGCA TGGCCTGGGG CCTGACGCAG
TCCGGCTTCT CGCGGGCGCT GGCGGCGGCG ATGACCGGCC TGCCCGGTGG CTCCGCCACC
TTCCTGGCGG TGTCGATCGT CGCCTTCGTC ATCCTCGGCA GCGTGCTGGA GGGCATTCCG
GCGATCGTGC TATTCGGGCC GCTGTTGTTT CCGATCGCCC GCGCCGTCGG CATCCACGAG
GTGCACTACG CCATGGTGGT GATCCTGGCG ATGGGCATCG GATTGTTCGC GCCGCCGTTC
GGCGTCGGCT ATTATGCAGC CTGCGCGATT GGCCGGGTCG ATCCCGCCGA AGGCATGCGC
CCGATCTGGG GATATATGCT GGCGCTACTG ATCGGCTTGA TCGTCGTCGC GGCGATCCCG
TGGATCTCGA TTGGATTCTT GTAG
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| Protein sequence | MASADASQLT AGERLHAPQR KTLIGALEAA LGLMVEIPAA ILVVVEIVVL FAGVVSRYVF
HSPLIWSDEL ASILFLWLAM FGAAVAFRRG EHMRMTAMVA GASPRLRAWL DLVGICAALA
FLLLIAAPAY EYAYEESYIT TPALSIANSW RAAALPVGIA LMALFAALRL IRFGDLKLVV
GAALTVALLI GAFWLAQPLF KPLGNINLVI FFVGVVACCV FAGVPIAFGF GLAIYGYLAL
TTTTPLLILV GRMDEGMSHL ILLSVPLFVF LGLLIEMTGM ARAMVAFLAS LLGHVRGGLH
YVLVGAMYLV SGISGSKAAD MAAVAPVLFP EMKERGAKPG DLVALLSATG AQTETIPPSL
VLITIGSVTG VSISALFTGG LLPGVVLAIM LSALVWWRYR GEDLSHVKRA RGSEIGKAFI
VALPALALPF VIRAAVVEGV ATATEVSTIG IVYAVVVGIL VYRKFDLRRL RPMLVETAAL
SGAILLIIGT ATGMAWGLTQ SGFSRALAAA MTGLPGGSAT FLAVSIVAFV ILGSVLEGIP
AIVLFGPLLF PIARAVGIHE VHYAMVVILA MGIGLFAPPF GVGYYAACAI GRVDPAEGMR
PIWGYMLALL IGLIVVAAIP WISIGFL
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