Gene Rpal_2961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2961 
Symbol 
ID6410631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3233234 
End bp3234124 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content65% 
IMG OID642712842 
Productdihydrodipicolinate synthase 
Protein accessionYP_001991944 
Protein GI192291339 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGCCA AGACGAAATT TCGGGGGTCG TTTACCGCCT TGGTCACGCC GTTCAAAAAT 
GGCGCCCTCG ACGAGCAGGC GTTTCGCAGC CTGGTGAACT GGCAGATCGA GCAGGGCACC
CACGGTCTGG TGCCGGTCGG AACCACCGGC GAAAGCCCGA CGCTGAGCCA CGAGGAACAC
CACAAGGTGG TGGAGTGGTG CATCGCGGAG GCCAAGGGCC GCGTGCCGGT GATCGCCGGC
GCCGGTTCCA ACTCGACCCG CGAAGCCGTC GAGCTTGCGC GCCACGCCGA GAAGGCGGGC
GCCGATGCGG TGCTGGTGGT GACGCCGTAC TACAACAAGC CGACCCAGGA AGGCATGTAT
CAGCACTTCA AGGCGGTGAA CGATGCGATC GGGATTCCGA TCATCATCTA CAACATTCCG
CCGCGCTCGG TCGTCGACAT GTCGGTCGAC ACCATGAGCC GGCTGTACGA GCTCGACAAC
ATCGTCGGCG TGAAGGACGC GACCGCCAAT CTCGGCCGGG TGTCGCAGCA GCGCCACGCG
ATGGGCCCGG ACTTCATCCA GCTCTCCGGC GAGGACATGA CCGCGCTGGC CTATATGGCG
GCCGGCGGCC ATGGCTGCAT CTCGGTGGTG TCGAACATCG CGCCGAAGTT GTGTTCGGAC
CTGATGGGCG CGGTGTTCGC GGGCGACTAT CCTGGCGCGC TGAAGATCCA GGATCGCCTG
GTGCCGCTGC ACGACGCGGT GTTCAAGGAG CCGGGCGTCG CCGGTGCCAA GCATGGCCTG
ACGCTGCTCG GCCGTATTCA GGAAGAGGTC CGGCTGCCGC TGATGACGGT GACCGAACCG
ACCGGCAAGG CGATCCGTGC GGCGATGGTG CACGCAGGAG TGATCAACTG A
 
Protein sequence
MAAKTKFRGS FTALVTPFKN GALDEQAFRS LVNWQIEQGT HGLVPVGTTG ESPTLSHEEH 
HKVVEWCIAE AKGRVPVIAG AGSNSTREAV ELARHAEKAG ADAVLVVTPY YNKPTQEGMY
QHFKAVNDAI GIPIIIYNIP PRSVVDMSVD TMSRLYELDN IVGVKDATAN LGRVSQQRHA
MGPDFIQLSG EDMTALAYMA AGGHGCISVV SNIAPKLCSD LMGAVFAGDY PGALKIQDRL
VPLHDAVFKE PGVAGAKHGL TLLGRIQEEV RLPLMTVTEP TGKAIRAAMV HAGVIN