| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2930 |
|---|
| Symbol | |
|---|
| ID | 6410600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3196849 |
|---|
| End bp | 3198459 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642712811 |
|---|
| Product | putative beta (1-6) glucans synthase, NdvC-like protein |
|---|
| Protein accession | YP_001991913 |
|---|
| Protein GI | 192291308 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG5309] Exo-beta-1,3-glucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0666963 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGCACGC CGCTGCTGTT GATCCCGATC TCGTTGGCCA TGATCTTCGG TGTGTGGTGG
TGGATCGCCA CGCCGATCAC GCTTGAACGC GCGCCGATCG AAGCCAACTC CAAACTGGAA
TGCGTCTCGT ACGCGCCGTT CCGCGGCGCG CAGACGCCGC TCGATCCGAC GACGCATATC
GACGCCGAGC AGATCGCGCA GGACATGGCG CAGCTCGCCA AGATCTCGAA GTGCGTTCGT
ACCTATTCGA TCGATAACGG CCTCGACCAG CTTCCACCGC TCGCCGCCAA GGTCGGGCTG
AAGGTGCTGC AGGGCATCTG GCTGTCGAAC GACCGCTCCA AGAACCTCGC GCAGATCGCG
ACCGCGGTCG GCCTCACCAA AGCCTATCCG GACGTGATCA CCGGTTTGGT GGTCGGCAAT
GAAGTCTTGC TTCGCGGCGA GATGACGACG GCTGATCTGG CTGCAACCAT TCGGCTGGTG
AAGGCGCAGG CCAAGGTGCC GGTGACTTAT GCGGACGTCT GGGAATACTG GCTGCGCAAC
CGCGAGATCT ACGACGCGGT CGATTTCGTC ACCATTCATA TCCTGCCGTA CTGGGAGGAC
ATGCCGGTCC GCGCCCGCTA CGCCGCGAAC CACGTCGACG CGATCCGCAA GCAGGTCGCG
GTGGCGTTCC CGGGCAAGGA AATCCTGATC GGCGAAACCG GATGGCCGAG CGCCGGCCGG
ATGCGCGAAG GCGCTTTGCC GTCGCGTGCC AACCAGGCGC GAGTGGTGTC GGAAATTCTC
GCTCTCGCCA AGGCGGAGAA CTTCCGCGTC AATCTGATCG AAGCTTACGA CCAGCCTTGG
AAACGCGACC TCGAAGGCAC CGTCGGCGGT TATTGGGGCC TGATCGACGC CGACAACCGC
GCCGAGAAGT ATCCGGCGGG CGTGCCGATC AGCAACTTCC CGTATTGGAA GCTCGACGCT
GCCGCCGGCA TGACGCTGAG CGTTCTGGTA TTTCTGACCG CGATCCTGAC GCTGCGTCGG
CGTCCGTGGG CGCCGCGGCT GATCTCCTGG CTGGCGGTGG GCACGTCGGC GACGGTCGCC
GGCATTCTGC TCGGCATTGC GGTCGACAAG CTGCTGGTCG AAAGTTACGG CGTCGGGCGC
TGGGTGCAGT GGAGCCTGCT GCTCGCCAGC GGCATTTTGA CGCCGATCCT CGGTGCGCAT
GCGTTGATGT CCGGTCGGCC GCTTCCGACC TTCCTGGATC TGTTCGGGCC GCGCGAAGAC
CGGTCGCATT CGTTTGCGAC TTGGGCGCTC GGGCTGGCTG TAGCGGTGAC CGTGCTGATC
GGCGCCCAGA CCGCGCTCGG CTTCACCTTC GATCCGCGCT ACCGCGACTT CCCGTTCGCG
TCGCTGACGA TGGCGGTGGT GCCGCTGTTC CTGCTGGTGC TGCTGAACCG GCCGCAGCAG
GGGCTCCGGC CGATCGCCGA AGCCTCGTTC GCGGGCCTGT TCGCCCTCTG CGCGCTGTAC
ACCGTGTTCA ACGAAGGGCC GAAGAACTGG CAGTCGCTGT GGACATGCGC AGTTTACGCG
ATGCTCGCGC TCACGCTGTG GCGGGCGCGG GTCGCGCAAA CCCCAAAATA A
|
|---|
| Protein sequence | MRTPLLLIPI SLAMIFGVWW WIATPITLER APIEANSKLE CVSYAPFRGA QTPLDPTTHI
DAEQIAQDMA QLAKISKCVR TYSIDNGLDQ LPPLAAKVGL KVLQGIWLSN DRSKNLAQIA
TAVGLTKAYP DVITGLVVGN EVLLRGEMTT ADLAATIRLV KAQAKVPVTY ADVWEYWLRN
REIYDAVDFV TIHILPYWED MPVRARYAAN HVDAIRKQVA VAFPGKEILI GETGWPSAGR
MREGALPSRA NQARVVSEIL ALAKAENFRV NLIEAYDQPW KRDLEGTVGG YWGLIDADNR
AEKYPAGVPI SNFPYWKLDA AAGMTLSVLV FLTAILTLRR RPWAPRLISW LAVGTSATVA
GILLGIAVDK LLVESYGVGR WVQWSLLLAS GILTPILGAH ALMSGRPLPT FLDLFGPRED
RSHSFATWAL GLAVAVTVLI GAQTALGFTF DPRYRDFPFA SLTMAVVPLF LLVLLNRPQQ
GLRPIAEASF AGLFALCALY TVFNEGPKNW QSLWTCAVYA MLALTLWRAR VAQTPK
|
|---|
| |