| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2860 |
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| Symbol | |
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| ID | 6410529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3119017 |
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| End bp | 3120213 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642712740 |
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| Product | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001991843 |
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| Protein GI | 192291238 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAACT CGCCCCGTAC TGCTGCCATC ATCGTCGCCG CCGGTCGCGG CCTGCGCGCC
GGCGCGGGCG GCCCCAAGCA ATACCGCACC CTCGCCGGCA GGCCGGTGAT CGCGCGAGCG
ATGGAGCCGT TCTGCACCCA TCCGGGCGTG ATGGCGGTGC AGCCGGTGAC GAATCCCGAC
GACACCGAGA TGTTCAACGC GGCAGTCGCC GGCCTGAATT TCCGCCCCGC GGTCGGCGGC
GGCGCAACCC GGCAGGCGTC GGTCCGCGCC GGCCTGGAGG CGCTGGCCGA GCTGAAGCCG
GACATCGTGC TGATCCACGA CGCGGCGCGT TGCTTCGTCA CCCCGGAGCT GATCTCGCGC
GCGATCACCG CGGCCGGCGC GACCGGCGCT GCGCTGCCTG TCGTCGCCGT AACCGACACG
ATCAAGCAGG TCGACAGCAG CGGCGCGGTC GACGCGACGC CGGACCGCGC TAGCTTGCGG
ATCGCCCAGA CCCCACAGGC GTTCCGTTTC GATGTGATCC TCGACGCCCA CCGCCGCGCG
GCCTCTGGCG GCCGGGACGA TTTCACCGAC GACGCCGCGA TCGCCGAATG GGCGGGATTG
ACGGTGTCGA CCTTCGAGGG CGATGCTAAC AACATGAAGA TGACCACCCC GGAAGATTTC
GCGCGCGAGG AAAGCCGGCT GATGGCCGCA CTCGGCGACA TCCGCACCGG CACCGGCTAC
GACGTGCATG CGTTCGGCGA AGGCGACCAC GTCTGGCTGT GTGGCCTGAA GGTGCCGCAC
ACCCGCGGCT TCCTGGCGCA TTCTGACGGC GACGTCGGCC TGCACGCGCT GGTCGACGCG
ATCCTCGGCG CGCTGGCGGA CGGCGACATC GGCTCTCACT TCCCGCCGAC CGATCCGCAG
TGGAAGGGCG CGGCCTCTGA CAAGTTCCTC AAATACGCGA TCGACCGCGT CACTGCGCGC
GGCGGCCGCG TCGCCAATCT CGAAGTGACG ATGATCTGTG AGCGACCGAA GATCGGACCG
CTGCGCGACG CGATGCGTCA GCGCATCGCC GAGATCACCG GCGTGCCGGT GTCGCGCGTC
GCGGTGAAGG CCACCACCAG CGAGAAGCTC GGCTTCACCG GCCGTGAGGA AGGCATCGCG
GCGACCGCAT CCGCCACCAT CCGGCTGCCC TGGGGCGCCG ACGGACTGGC CGGCTGA
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| Protein sequence | MTNSPRTAAI IVAAGRGLRA GAGGPKQYRT LAGRPVIARA MEPFCTHPGV MAVQPVTNPD
DTEMFNAAVA GLNFRPAVGG GATRQASVRA GLEALAELKP DIVLIHDAAR CFVTPELISR
AITAAGATGA ALPVVAVTDT IKQVDSSGAV DATPDRASLR IAQTPQAFRF DVILDAHRRA
ASGGRDDFTD DAAIAEWAGL TVSTFEGDAN NMKMTTPEDF AREESRLMAA LGDIRTGTGY
DVHAFGEGDH VWLCGLKVPH TRGFLAHSDG DVGLHALVDA ILGALADGDI GSHFPPTDPQ
WKGAASDKFL KYAIDRVTAR GGRVANLEVT MICERPKIGP LRDAMRQRIA EITGVPVSRV
AVKATTSEKL GFTGREEGIA ATASATIRLP WGADGLAG
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