Gene Rpal_2801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2801 
Symbol 
ID6410466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp3045081 
End bp3045788 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content67% 
IMG OID642712678 
Productcold-shock DNA-binding domain protein 
Protein accessionYP_001991785 
Protein GI192291180 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.674549 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGTCGG ACGGATTTGA GTCCAAAAGG CCGGGCGTTT TGCCCGCAGC CAGCGCTGCG 
AAGCCGAGAG CAGCGGAGTT TCCGGTGGGC GATTTCTCGC CGCGGGACTT CGGTGCCGGA 
GCGCATGGCG ACCTTTCGGC TCCCCGCGAT CTAAATCCGC GCGATGCCTT TACGGGTCTT 
GGCGAAGCCG CGAACCTCGT CGAGATCAGC GGTGTCATCA AGTGGTTTGA CGCCTCGAAG 
GGCTACGGCT TCGTGGTTCC CGACAATGGC TGGCCCGACG TTCTGCTGCA CGTCACGGTG 
CTGCGCCGCG ACGGCTACCA GACCGCCTAT GAGGGCGCCC GCATCGTCGT CGAGTGCGTG 
CAGCGCGCCA AGGGTTACCA GGCGTTCCGC ATCGTCTCGA TGGACGAGTC GACCGCGATC 
CATCCGGCGC AGATGCTGCC GGCCCGCACC CATGTCAGCG TGACGCCGAC CAGCGGGCTG 
GAGCGCGCGC AGGTCAAGTG GTTCAACCGG CTGCGCGGGT TCGGCTTCCT GACCTGCGGT 
GAGGGCACGC CGGACATCTT CGTGCACATG GAAACGCTGC GCCGCTACGG CATGACCGAG 
CTGCGGCCGG GCCAGTATGT GCTGGTGCGG TTCGGGCCGG GCTCGAAGGG CATGATGGCT 
GCCGAGATCC AGCCGGAGAA CGGCGCACCC GGCCTGTCCT CGCACTGA
 
Protein sequence
MGSDGFESKR PGVLPAASAA KPRAAEFPVG DFSPRDFGAG AHGDLSAPRD LNPRDAFTGL 
GEAANLVEIS GVIKWFDASK GYGFVVPDNG WPDVLLHVTV LRRDGYQTAY EGARIVVECV 
QRAKGYQAFR IVSMDESTAI HPAQMLPART HVSVTPTSGL ERAQVKWFNR LRGFGFLTCG 
EGTPDIFVHM ETLRRYGMTE LRPGQYVLVR FGPGSKGMMA AEIQPENGAP GLSSH