| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2728 |
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| Symbol | |
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| ID | 6410392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2959788 |
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| End bp | 2962949 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642712604 |
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| Product | ribonuclease, Rne/Rng family |
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| Protein accession | YP_001991712 |
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| Protein GI | 192291107 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.236076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAACA AGATGCTGAT CGACGCCACC CACCCGGAAG AGACCCGGGT GGTCGTGGTC
CGTGGCAACC GCGTCGAAGA GTTTGATTTC GAAACCGCCC AGCGCAAACA ACTCCGCGGC
AATATCTATC TCGCAAAAGT CACCCGGGTC GAACCCTCGC TACAAGCCGC CTTCATCGAA
TATGGCGGCA ATCGCCACGG CTTCCTCGCC TTCAGCGAAA TCCATCCCGA CTATTATCAA
ATCCCGGTCG CCGACCGGCA GGCCCTGATC GAAGCCGACG AACGCGCCCA CCGCGAAGCC
GAAGAAGAAA ACGAGCAGCG CTCCAGCCGC CGCCGGTCGC GGCATCGCAG CCATCGCCGC
CGCAACAACG GCGAGCGGGT GCAGAGCGAG ATCGTCGAAG CCGCTACCGA CGTCGCGGCC
GAGCAGCCCC ACGAGGCTGC CGACCATCAC GAGGCGCACG AGGCCGGGGC TCACGCCGAG
GCTGAGCGCT TGATGCACGA GTTGCCGGAG GGTGAGACCG CCGAGCAGCA CGACGCCGAG
TACGCCGCCG ATCACGAACA CACCCACGTC GAAGCTGCTC CGTCCGAGCC TCAGGTGAGC
GCTGCGGCCG AGCCCGTCAC GATCGAGCAG CCGGCGGCTG CCGAGGCTCC CGCGCCGGTC
GAAGCCCCGC AGGCAGCGGC GTCGCACGAC GAAACCGACG CGCACGACGA CGACCACGGC
GAGGACAGCG CGAACTACGC CGAGGACGCG CCGTTCCCGA TCGACGAGCA CCACGAGGCC
GAAGACGAAC ACGAGGCGCA CGACGATCAC GTTGAAGGCG AGCACGAGGT CGAAACCGAC
TCCGACTCCG ACACCGAGGC GGAAGCCGAG GACGACGAGG AAGAGGATGA CGAAGAGGAA
GCCGAGGAGG ACGTGGTCGA GTCCGTCGGC GGTGACGACG TGCTCGAGGA AGTGCCGGAA
CGCGCCTTCC GTCCGCGCCG GCAGTACAAG ATCCAGGAAG TCATCAAGCG CCGCCAGGTG
ATGCTGGTGC AGGTCGTCAA GGAAGAGCGC GGCAACAAGG GTGCTGCGCT CACCACCTAC
CTGTCGCTCG CCGGCCGTTA CGCCGTGTTG ATGCCGAACA CCGCCCGCGG CGGCGGCATC
AGCCGCAAGA TCACCTCGGC CCAGGACCGC TCACGGCTGA AGGAAGTGGT GCAGGACCTC
GACGTGCCGG AAGGCATGGG CGTGATCCTG CGCACCGCCG GCGCCTCGCG GACCAAGCCC
GAGATCAAGC GCGACTTCGA ATACCTGATC CGGATGTGGG AGACGGTGCG CGACGTCACG
CTGAACTCGC AGGCGCCGAA GCTGGTCTAT GAAGAAGGCT CGCTGATCAA GCGCTCCCTG
CGCGACCTCT ACAACAAGGA AATCGACGAG GTGCTGGTCG CCGGCGAAGC CGGCTATCGC
GAAGCCCGCG ACTTCATGCA CATGCTGATG CCGTCGCAGG TGCGCGCGGT GAAGCTGTAT
CGTGACGGCC AGCCGCTGTT CTCGCGGATG GGCGTCGAGA GCCAGCTCGA CGCGATGTTC
TCGCCGACCG TGCAGCTCCG CTCCGGCGGC TACATCGTCA TCAACCAGAC CGAAGCGCTG
GTCTCGATCG ACGTCAACTC GGGGCGCTCG ACCCGCGAGC ACCACATCGA GGACACCGCG
CTCAAGACCA ACATGGAAGC CGCCGAGGAA GTCGCCCGGC AGCTCCGGCT GCGCGACCTC
GCCGGCCTGA TCGTCATCGA CTTCATCGAC ATGGACGAGA AGCGCAACAA CCGCGCGGTC
GAGCGTAAGC TCAGCGACTG TCTGCGGCAG GATCGCGCTC GCATCCAGGT CGGCCGAATC
TCGCATTTCG GCCTGCTCGA AATGTCGCGC CAGCGCATCC GCGCCAGCGT GCTGGAGAGC
TCGACCGAGC CCTGCCCGCA TTGCGGCGGC TCGGGCCACG TCCGCTCGGT CTCCTCGGTC
GCGCTGCAGC TGCTGCGCGG CCTCGAAGAG GTGCTGATGA AGGGCGCGAC GCACAACCTG
ATCGTGCGCA CCCGCACCGA CGTGGCGCTG TACGTCCTCA ACCACAAGCG CGGCCATCTG
CGCGACCTCG AGACCGGCTT CCGGGTATCG CTGTCGGTGC TGGCCGATCC GACCGTCAGC
GGCCAGCAGT CGTTCGTGAT CGACCGCGGT GAGCAGGTCC ACACGCTCGA GACTGCCAAG
GCGCTCCTCG CCGCGCAGAT CGCCGCCTCC CCGGCACCGC TCGACGAGCC CGAGGATGAC
GACGGCTACG ATTTCGAAGC CGAGATCGAG ACCGACGAGA CCGTCGGCCT CGCCGAGGAT
CAGGGCAGCG AAGCCGGCGA AAGCGAAAGC GAAGGCCGCA AGCGCCGCCG TCGCCGCCGG
CGTCGGCGGT CGGGTGAGCC GCGTGAAGCC GCCGAAGCTG GTGCAGTGGG CGAAGATGGC
GAGCAGCCGT TTGTGTCCGA AGGCGTCGAA CAGGTCGGCG AAGCTGATGA AGGCGACGAG
GCCGGCGAAG ACGACAGCGA CGCCGAAGCC CGTGCCGACC AGGGCGAGAA CGGCGAACGC
CGTCCGCGCC GCCGCGGTCG TCGCGGTGGC CGTCGCCGTC GCGGCAATGC TGAGGCAGGC
GAGAACGAAG CCGGCGTGGT CGGCTCGATC AGCGACGAAC TCTCCCCGAC GGACGAAGCG
GAAGCTGCGG ACGCTGTCGC CGACTTCGAC GGCGGCAGCC CCTCGGTGCA ACCCAGCTTC
GAACCGGCTG CCGAGGCCGA GCAGCCGCAC GACGCTCCGC CGCACGACAT TGTGCCGTCC
GAGCCGCAGC ACACGGCAGC GACTGCCGCA CCCGACACCA GCGATCCGTC GGCCGAGGAC
GACAGCGCAG CGAAGAAGGC CGCGCGTCGC CGCTCCACGG TGCGCGAAAA GGTGAGCTTC
GGCGCATCGG CCGCCGCCTC CGAAACGACG GCGGAAGCCG CAGCCGAAGT CCAGCCCGAG
CCGACCGCTC AGGCCGAGCA GCCGGCCACG GCCGCGCCTG CGGTGGAAGC CCCGGCCGCC
GAGGCCGCGC CACAAGCAGC CGCACAACCC GCAGAGGAGC CCTCCTCGGC CGCCCCGCGG
CGCGTCGGCT GGTGGTCCCG CCGCTTCGGT GGTGGCAATT AA
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| Protein sequence | MANKMLIDAT HPEETRVVVV RGNRVEEFDF ETAQRKQLRG NIYLAKVTRV EPSLQAAFIE
YGGNRHGFLA FSEIHPDYYQ IPVADRQALI EADERAHREA EEENEQRSSR RRSRHRSHRR
RNNGERVQSE IVEAATDVAA EQPHEAADHH EAHEAGAHAE AERLMHELPE GETAEQHDAE
YAADHEHTHV EAAPSEPQVS AAAEPVTIEQ PAAAEAPAPV EAPQAAASHD ETDAHDDDHG
EDSANYAEDA PFPIDEHHEA EDEHEAHDDH VEGEHEVETD SDSDTEAEAE DDEEEDDEEE
AEEDVVESVG GDDVLEEVPE RAFRPRRQYK IQEVIKRRQV MLVQVVKEER GNKGAALTTY
LSLAGRYAVL MPNTARGGGI SRKITSAQDR SRLKEVVQDL DVPEGMGVIL RTAGASRTKP
EIKRDFEYLI RMWETVRDVT LNSQAPKLVY EEGSLIKRSL RDLYNKEIDE VLVAGEAGYR
EARDFMHMLM PSQVRAVKLY RDGQPLFSRM GVESQLDAMF SPTVQLRSGG YIVINQTEAL
VSIDVNSGRS TREHHIEDTA LKTNMEAAEE VARQLRLRDL AGLIVIDFID MDEKRNNRAV
ERKLSDCLRQ DRARIQVGRI SHFGLLEMSR QRIRASVLES STEPCPHCGG SGHVRSVSSV
ALQLLRGLEE VLMKGATHNL IVRTRTDVAL YVLNHKRGHL RDLETGFRVS LSVLADPTVS
GQQSFVIDRG EQVHTLETAK ALLAAQIAAS PAPLDEPEDD DGYDFEAEIE TDETVGLAED
QGSEAGESES EGRKRRRRRR RRRSGEPREA AEAGAVGEDG EQPFVSEGVE QVGEADEGDE
AGEDDSDAEA RADQGENGER RPRRRGRRGG RRRRGNAEAG ENEAGVVGSI SDELSPTDEA
EAADAVADFD GGSPSVQPSF EPAAEAEQPH DAPPHDIVPS EPQHTAATAA PDTSDPSAED
DSAAKKAARR RSTVREKVSF GASAAASETT AEAAAEVQPE PTAQAEQPAT AAPAVEAPAA
EAAPQAAAQP AEEPSSAAPR RVGWWSRRFG GGN
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