Gene Rpal_2576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2576 
Symbol 
ID6410238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2785561 
End bp2786637 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content64% 
IMG OID642712454 
Productnuclease (SNase domain protein) 
Protein accessionYP_001991564 
Protein GI192290959 
COG category[L] Replication, recombination and repair
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0797] Lipoproteins
[COG1525] Micrococcal nuclease (thermonuclease) homologs 
TIGRFAM ID[TIGR00413] rare lipoprotein A 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.901293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGATTCT TCTCGAAAAT GACGATCGGC ATGGCGGCCG CAGCCACGAT CGCGCTCGCT 
CCTGGTGGAG CGGACGCGCG GGGGTGGGAC ACCGTGCACC GCTTCGTGCA CAAGACAGGC
AAGTGCGGTG CGGGCAAAGA GGTCCTGGCG TCGCTGTATA CGATCGGTTC GCGGACGAGC
AGCGGCGAAC CAATGAACCA TGACGGCTTG ACCGCAGCCT CCCACGAATA CCCCCTCGGC
ACCACCGTTG TGGTCACCAA CCCGGCGAAC GGTCGAAGCT GCAGCATTCG GGTCAACGAT
CGCGGCCCCT ACGGAAAGCC GCGTGACCTC GGCGTAAAGA TCGACTTCAC CCTCGGATCG
GCACGGTGCC TCGGCATGCG TGGGACGCAG TATGTCTGCC TGCCGGGTGA AGAGCCGATC
GAGATCGCCG GCATTCCGCT GGTGATCGAC GGCAACACGG TGGAGATCAG CGGCACGAAA
ATTCGGCTGC AGGGGATCGA CGCGCCGGAA ACCGATCAGC TGTGCGTCGA CGAGAAGGGC
ACCGGTTGGA CCTGCGGCCT TGCGGCTCGT GACGAACTCG CCAAGCGCTT CGGCGAGAAG
CCCTGGACGT GCCAGGTCGC GGGTCACGAC AAATACGGCA GGTCGCTCGG TAGCTGTGCT
GTGAATGCGG AGAGCGTTGA AGAATGGATG GTGCGCTCCG GCTGGGCCGT GGCGCTGGTT
CGCTCGGCGC GCGCCTATGA GGCCGCCGAG GTCATTGCGC GGGACGCGCA ATCCGGCCTG
TGGTCGGGCG CCTTCATCAT GCCGTCCGAT TGGCGGAATC GAAACCAACA GACCACCATC
GTCGGAGCCG CCAACGTGCC GAGCAGCGCC CTGGAAATCC TGCGCGGCGC AGCATCAGTT
GCCGAAGCGC CATCGCCGGA ATGCGTCATC AAAGGCAATA TCGGCAAAGG CGGCCAGTGC
ACTTACCAGC AGCCGGGCAG TCACCTGTAC GCGAAGCTGA AGATGGGTAC GGGCAAGCGC
TGGTTCTGCA GCGTCAAGGA AGCAGAGACG GCGGGGTGCC GGGCGGTCAA GAAGTGA
 
Protein sequence
MRFFSKMTIG MAAAATIALA PGGADARGWD TVHRFVHKTG KCGAGKEVLA SLYTIGSRTS 
SGEPMNHDGL TAASHEYPLG TTVVVTNPAN GRSCSIRVND RGPYGKPRDL GVKIDFTLGS
ARCLGMRGTQ YVCLPGEEPI EIAGIPLVID GNTVEISGTK IRLQGIDAPE TDQLCVDEKG
TGWTCGLAAR DELAKRFGEK PWTCQVAGHD KYGRSLGSCA VNAESVEEWM VRSGWAVALV
RSARAYEAAE VIARDAQSGL WSGAFIMPSD WRNRNQQTTI VGAANVPSSA LEILRGAASV
AEAPSPECVI KGNIGKGGQC TYQQPGSHLY AKLKMGTGKR WFCSVKEAET AGCRAVKK