| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2567 |
|---|
| Symbol | |
|---|
| ID | 6410229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2772643 |
|---|
| End bp | 2773917 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642712445 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | YP_001991555 |
|---|
| Protein GI | 192290950 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.78639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATA GTGAATTGCT GACGCGCAGG CAGACGGCTG TCGTGCGGGG CGTCAGCCAA
GCGACGCCGG TGTTTGCAGA ACGTGCGCTG AACAGCGAGA TCTGGGACGT CGAGGGCAAG
CGTTACGTCG ATTTCGCCGG CGGCATTGCC GTGCTCAACA CCGGTCATTG CCATCCGCGC
ATCGTCGCGG CGATCCGTGA GCAGCTCGAT CGCTTCACTC ACACCTGTTT CCAGGTCGCG
CCTTATGAAG GTTACATCCG GCTCGCCGAG CGCCTGAATC AGTTAGCGCC GATCAACGGG
CCGCTGAAGT CGATCCTGCT GAGCACCGGT GCGGAAGCCA CCGAGAACGC CGTCAAGATC
GCGCGCGCCG CGACCGGCCG CAGCGGCGTG ATCGCCTTCA CGGGTGGTTT CCATGGCCGC
ACTGCATTCG CCTCGGCGAT GACCGGCAAG GTCATTCCTT ACAAGAAGGC ACTCGGTCCG
CCGCTTCCTG GCGTCTGGCA TGTTCCGTTC CCGGTCGCCG GTAGTGACGT CTCGGTCGAG
GATGCGCTGC GCTGCGTGCA GTTCGTGTTC AAGGCCGATA TCGATGCGTC GCAGGTTGCC
GCGATCATCA TCGAGCCGGT GCAGGGCGAG GGCGGCTTCC ATCAGGCGCC GCCCGAACTG
ATGCGGGGCT TGCGCAGGCT GTGCGACGAG AACGGCATCG TGCTGATCGC CGACGAAGTG
CAGACCGGCT TCGGGCGCAC CGGCAAGATG TTCGCGATGG AGCACTACGA CGTTCAGGCC
GACATCGTCT GCGTCGCCAA GAGCCTTGCC GGCGGCTTGC CGCTGTCGGG CGTGATCGGC
CGCGCCGCGA TCATGGATGC GGCGGAGCCG GGCGGCCTCG GCGGTACCTA TGCGGGCAAT
CCGCTGGCCT GCGCCGCAGC GCTCGCGGTG CTCGATGTGT TCGAAGAGGA GAATTTGATC
GCGCGTGCGA ACCAGATCGG CGAGCGGCTG CGCAGCGCGA TCGATCGGTT CGCGCTGTCG
AACACGCTGG TGCCGACCTC GGTCGCGCGC GGCCCTGGTG CGATGGTTGC ATTCGACATC
CTCAAGCAGC GCGGCAGTAA CGAGCCGGAT GCGGAGGCGA CCAGGCGGGT GACCCGGCTG
GCGCACGAGA ACGGTCTGAT CCTGCTGTCG TGCGGCACCG CCGCCAACAC CATTCGCATT
CTGGTGCCGC TGACGGCCTC CGATGCGATC GTCGACGAAG GGTTGGCGAT CCTGGAGCGC
TGCCTCGCCG CTTAG
|
|---|
| Protein sequence | MTNSELLTRR QTAVVRGVSQ ATPVFAERAL NSEIWDVEGK RYVDFAGGIA VLNTGHCHPR
IVAAIREQLD RFTHTCFQVA PYEGYIRLAE RLNQLAPING PLKSILLSTG AEATENAVKI
ARAATGRSGV IAFTGGFHGR TAFASAMTGK VIPYKKALGP PLPGVWHVPF PVAGSDVSVE
DALRCVQFVF KADIDASQVA AIIIEPVQGE GGFHQAPPEL MRGLRRLCDE NGIVLIADEV
QTGFGRTGKM FAMEHYDVQA DIVCVAKSLA GGLPLSGVIG RAAIMDAAEP GGLGGTYAGN
PLACAAALAV LDVFEEENLI ARANQIGERL RSAIDRFALS NTLVPTSVAR GPGAMVAFDI
LKQRGSNEPD AEATRRVTRL AHENGLILLS CGTAANTIRI LVPLTASDAI VDEGLAILER
CLAA
|
|---|
| |