| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2455 |
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| Symbol | |
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| ID | 6410117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2649251 |
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| End bp | 2652010 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642712334 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_001991444 |
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| Protein GI | 192290839 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.739869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC AACTGCTGCT CACAACGTCA CTCGCGCCGC TCTTTGCGGT GGGCGTGCTC
GGCGGTTCTC CGGCCCATGC GGACTGCTCG ATCACCGGAA ACACGACAGG CATCAGCTGC
AGCAGCGGAA GCATTTCGAG CGCCACGGCG ACGGTTGGCG ACGGCCCCGG AGCCAACGGC
AGCGCCACCC TCAGCGGCGT AGGAGCGAGC TGGACCGACA CAAACGAGGT GAGCGTCGGC
CGCGATGGCG GCGTCGGCAG TATCAATGTG TCGAACGGCG CCGCGTTGAC CACGCGGCGG
CTCGCGCTCT CCACCGGGAG CTGGGAAGCC GGCAGCGGCG GCAATGGCTC GCTGGTGGTG
ACCGGTCCGC AGACCGTGTG GACCAGCACC GGCGGCGTCG ATATCGGGCG TACCGCGGGG
GCGACCGGCA GCCTGACGAT TTCAAACGGC GCGGCTGCTT ATATCCGCAA CACCGGCATC
TACACCGGCG CCGGTGCCGA GATCACCATT CGCGATGCTG GTACCCACGT CGAGATCGGT
GATCCGAACA ATTCGAGCGC TGCGGCTTGG CTGAGTCCTT CCGGCGGCAC CGTCAACGTC
CTGAACGGAG CCTATCTCTA TGCCAGCGGC ATCTATGTAG GACCGGATGG CAGCAATCTC
ACGACCATGA ACATCTCGGG CCGTGGGACG ATCGTCGATG TCGCTGAGCG CATCTATGTT
GGCGGCCAGA ACGGGGGACG CGACGTTGAT CCGATGAACG GCAACGGTAT TCTGAACGTG
ACCGATGGCG CTGTGGTCAC ATCAGCTTCC ATCGGTGCCG GCATGGACCC GCATTCGCAA
GGTACCATCA ACGTTTCCGG GAACGGCACA CGCCTGTGGG CTAAAGCCAA TGTTGCCGGC
AACGCCCCAG GGAATGTCTA TGCCGGCTTC AATGGCAACG GCACCGTGGT CGTGTCGAAC
GGCGCCGAGC TCAAGGCCGA CAACGAGATC CGGATCGGCT ACGACACCCA GGGGCAAGGC
GTGCTGGCGA TCGGTGCGGC GAGCGGGCAG GCGGCCGCTG CGCCGGGCAC GATCACCGCG
CGCCGCATCG TGTTCGGCAG CGGCACCGGT CAGCTCGTCT TCAACCACAC CTCGTCCAAC
TACACGCTGG CTTCCGACAT CATCGGCAAC GGCTCGATCC AAGCAATTGC CGGCCGCACC
ACGCTGACAG GCGATTCTTC GCAGTTCACC GGCACGATGC AGGTGAGCGG CGGCATCCTG
ACCATGACCG GCGTGATCGG CGCGGTGATG GCGGTGGAAA GCGGCGCGGT GCTGACCGGC
TCTGGCACGG TCGGCGGCGT CGACGCCCAG GCCGGCGCAA CAGTCGCGCC CGGCAACAGC
CCCGGTACGT TGACGGTGAC CGGCAATTAT CAGCAGGCGG CCGGCTCGAC CTACAATGCC
GAACTGGTGC CGGGCAGCAC GGTATCGGAC CGGATCGCGG TCGGCGGCAC CGCGACGATT
GCGCCTGGCG CGATCCTGAA GCTCACCAAA TACGGCACCG CCCCTTACGC GCTGGATGCG
CGCTACACCG TGCTGACCGC CGCAGGCGGC GTCAACGGCA CCTACGTCCT GACCGGCGAC
ACCAGCGTGT CGGCGTTCTA TTCGCTGATC GCCAACTACG ATCCGAACAA CGTCTATCTG
CAGGCGGCGC AGACCCGCGG CTTCACTGAG GTGGCGCTGA CCGCCAATCA GCGCGCTACC
GCGGGCGTGT TGCAGGCGAT GGGGAGTGGC GGTCTTCGTG CCGGCGTCGC GGCGTCGCCG
ACCGACACTG CGGCACGGGC GGCGTTCGAT CAGCTCTCCG GCGAGGCCTT CGCATCGGCC
AAGACCGCGC TGCTCGACGA CAGCCGGTTC GTGCGCGAAG CGACCTCGCA GCAGGTGCAG
TCCGCGCTGC GCGGACCTGA CACGGCGGTG TGGGCTCGCG CCTATGGCTC GTGGGCCAAG
GCTGATGGCA ATGGCAATGC CGCAGACGTG CGTCGCAATG CCGGCGGCGT GCTGTTCGGT
GCCGATGGCG AATTGTTCAA CGCGCTGCGG CTCGGCGTGG TCGGCGGCTA TGGTTCGACT
TCGATCAATC TCGACGGCGG CCGCGGTTCG GTGACGGGCG ACAGCTACAG TGTCGGTGTC
TACGGCGGCC GGGCCTGGAA CGCGCTGGCG GTCAGCTTCG GCGCCAATCA CGCCTGGCAC
AATCTGTCCT CGACCCGCAC CGTGGCGCTG ACCGGCTTCG CCGACCGGCT GACCGCGGAC
TACAACGCCC GCACCACGCA GGTCTATGGT GATGTCGGTT ACACCGTCGA CCTCGGCCGC
GCTGCGCTGC AACCGTTCGC AGGCCTTGCT TATGTCAGCC TCGACACCTC CGGCTTCACC
GAGCGGGGCG GGGCGGCTGC GCTCCGCAGC GCTGGCGACA ATGTCGATGC CACGTTCTCG
ACACTCGGCC TGCGTGCCAA CGGTGCGCTG ACGCTCGGCA CCACCGCCGT GACGGCGAAC
GGCATGGTCG GCTGGCGGCA CACGATGAAC AGCGTGATCC CCACCGCCAC CAATGCGTTC
GCAACCAGCA ACGCCTTCAC GGTGTCGGGT CTTCCGCTGG CGAAGGACGT CGCCGTGTTC
GAAGCCGGCC TCGGCACCGC GCTCAATCCG AGTACCGCGC TCAGCGTCAA CTACTCCGGC
CAGGTCGGCT CCAGCATCTC CGACCACGGT GTCCGCGCCA ACCTGCGCGT CACGTTCTGA
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| Protein sequence | MKKQLLLTTS LAPLFAVGVL GGSPAHADCS ITGNTTGISC SSGSISSATA TVGDGPGANG
SATLSGVGAS WTDTNEVSVG RDGGVGSINV SNGAALTTRR LALSTGSWEA GSGGNGSLVV
TGPQTVWTST GGVDIGRTAG ATGSLTISNG AAAYIRNTGI YTGAGAEITI RDAGTHVEIG
DPNNSSAAAW LSPSGGTVNV LNGAYLYASG IYVGPDGSNL TTMNISGRGT IVDVAERIYV
GGQNGGRDVD PMNGNGILNV TDGAVVTSAS IGAGMDPHSQ GTINVSGNGT RLWAKANVAG
NAPGNVYAGF NGNGTVVVSN GAELKADNEI RIGYDTQGQG VLAIGAASGQ AAAAPGTITA
RRIVFGSGTG QLVFNHTSSN YTLASDIIGN GSIQAIAGRT TLTGDSSQFT GTMQVSGGIL
TMTGVIGAVM AVESGAVLTG SGTVGGVDAQ AGATVAPGNS PGTLTVTGNY QQAAGSTYNA
ELVPGSTVSD RIAVGGTATI APGAILKLTK YGTAPYALDA RYTVLTAAGG VNGTYVLTGD
TSVSAFYSLI ANYDPNNVYL QAAQTRGFTE VALTANQRAT AGVLQAMGSG GLRAGVAASP
TDTAARAAFD QLSGEAFASA KTALLDDSRF VREATSQQVQ SALRGPDTAV WARAYGSWAK
ADGNGNAADV RRNAGGVLFG ADGELFNALR LGVVGGYGST SINLDGGRGS VTGDSYSVGV
YGGRAWNALA VSFGANHAWH NLSSTRTVAL TGFADRLTAD YNARTTQVYG DVGYTVDLGR
AALQPFAGLA YVSLDTSGFT ERGGAAALRS AGDNVDATFS TLGLRANGAL TLGTTAVTAN
GMVGWRHTMN SVIPTATNAF ATSNAFTVSG LPLAKDVAVF EAGLGTALNP STALSVNYSG
QVGSSISDHG VRANLRVTF
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